Evidence map›Paper›PMID 39550377›Full record

ArticleNature communications2024

A non-canonical mechanism of GPCR activation.

Alexander S Powers, Aasma Khan, Joseph M Paggi, Naomi R Latorraca, Sarah Souza, Jerry Di Salvo, Jun Lu, Stephen M Soisson, Jennifer M Johnston, Adam B Weinglass and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Deciphering the allosteric landscape of 5-HTPharmacological reports : PR · 2026
    Article
  2. Lipid Activation of a Thalamic GPCR Extends Working Memory Time-scales.bioRxiv : the preprint server for biology · 2026
    Article
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  9. Bitopic AJournal of medicinal chemistry · 2025
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Alexander S Powers *Department of Chemistry, Stanford University, Stanford, CA, USA.
Aasma Khan *Department of Quantitative Biosciences, Merck & Co., Inc., Rahway, NJ, USA.
Joseph M PaggiDepartment of Computer Science, Stanford University, Stanford, CA, USA.
Naomi R LatorracaDepartment of Computer Science, Stanford University, Stanford, CA, USA.
Sarah SouzaDepartment of Quantitative Biosciences, Merck & Co., Inc., Rahway, NJ, USA.ORCID 0009-0000-4212-224X
Jerry Di SalvoEvotec, Princeton, NJ, USA.
Jun LuDepartment of Structural Chemistry, Merck & Co., Inc., West Point, PA, USA.
Stephen M SoissonDepartment of Structural Chemistry, Merck & Co., Inc., West Point, PA, USA.ORCID 0000-0002-5089-3885
Jennifer M JohnstonDepartment of Modeling and Informatics, Merck & Co., Inc., Rahway, NJ, USA.
Adam B WeinglassDepartment of Quantitative Biosciences, Merck & Co., Inc., Rahway, NJ, USA.
Ron O DrorDepartment of Computer Science, Stanford University, Stanford, CA, USA. ron.dror@stanford.edu.ORCID 0000-0002-6418-2793

Funding

Discovering the mechanism of GPCR-mediated arrestin stimulation to enable effective drug therapiesR01GM127359 · NIGMS · STANFORD UNIVERSITY · PI DROR, RON · 2018 to 2022
$1.5M
Stanford Chem-H Chemistry/Biology Interface Predoctoral Training ProgramT32GM120007 · NIGMS · STANFORD UNIVERSITY · PI BERTOZZI, CAROLYN · 2016 to 2020
$1.2M
NIGMS NIH HHS R01 GM127359NIGMS NIH HHS T32 GM120007U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM127359
6 · The paper itself

Abstract

The goal of designing safer, more effective drugs has led to tremendous interest in molecular mechanisms through which ligands can precisely manipulate the signaling of G-protein-coupled receptors (GPCRs), the largest class of drug targets. Decades of research have led to the widely accepted view that all agonists-ligands that trigger GPCR activation-function by causing rearrangement of the GPCR's transmembrane helices, opening an intracellular pocket for binding of transducer proteins. Here we demonstrate that certain agonists instead trigger activation of free fatty acid receptor 1 by directly rearranging an intracellular loop that interacts with transducers. We validate the predictions of our atomic-level simulations by targeted mutagenesis; specific mutations that disrupt interactions with the intracellular loop convert these agonists into inverse agonists. Further analysis suggests that allosteric ligands could regulate the signaling of many other GPCRs via a similar mechanism, offering rich possibilities for precise control of pharmaceutically important targets.

Indexed as

Receptors, G-Protein-CoupledSignal TransductionAllosteric RegulationAnimalsHEK293 CellsHumansLigandsMolecular Dynamics SimulationMutationProtein BindingFFAR1 protein, humanLigandsReceptors, G-Protein-Coupled

Identifiers

PMID39550377
PMCPMC11569127

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.