Evidence map›Paper›PMID 39550368›Full record

ArticleScientific data2024

De novo transcriptome analysis of the Indian squid Uroteuthis duvaucelii (Orbigny, 1848) from the Indian Ocean.

Nisha Krishnan, Sandhya Sukumaran, V G Vysakh, Wilson Sebastian, Anjaly Jose, Neenu Raj, A Gopalakrishnan

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Draft genome sequence ofMicrobiology resource announcements · 2026
    Article
  2. Tissue-Specific Gene Expression of Digestive Tract Glands inAnimals : an open access journal from MDPI · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nisha KrishnanICAR-Central Marine Fisheries Research Institute, Ernakulam North P.O., Kochi, 682018, Kerala, India.
Sandhya SukumaranICAR-Central Marine Fisheries Research Institute, Ernakulam North P.O., Kochi, 682018, Kerala, India. sandhyasukumarancmfri@gmail.com.ORCID 0000-0001-6177-469X
V G VysakhICAR-Central Marine Fisheries Research Institute, Ernakulam North P.O., Kochi, 682018, Kerala, India.ORCID 0009-0000-4948-5019
Wilson SebastianICAR-Central Marine Fisheries Research Institute, Ernakulam North P.O., Kochi, 682018, Kerala, India.ORCID 0000-0002-8648-0951
Anjaly JoseICAR-Central Marine Fisheries Research Institute, Ernakulam North P.O., Kochi, 682018, Kerala, India.
Neenu RajICAR-Central Marine Fisheries Research Institute, Ernakulam North P.O., Kochi, 682018, Kerala, India.
A GopalakrishnanICAR-Central Marine Fisheries Research Institute, Ernakulam North P.O., Kochi, 682018, Kerala, India.

Funding

Indian Council of Agricultural Research (ICAR) MBTD/GNM/25
6 · The paper itself

Abstract

Cephalopods have dominated the oceans for hundreds of millions of years and are unquestionably at the peak of molluscan evolution. The development of the large brain and a well-sophisticated sensory system contributed significantly to its success. Therefore, it is considered the best example of convergent evolution and attracted the attention of scientists from various disciplines of biology. The aim of the present study is to construct a reference transcriptome in the Indian squid Uroteuthis duvaucelii to gain insights into cephalopod evolution and enrich the existing cephalopod database. Around 72 million short Illumina reads were generated from five different tissues, including the brain, eye, gill, heart and gonads, and assembled using the Trinity assembler. About 26230 protein-coding sequences were annotated from the assembled transcripts. The BUSCO completeness of the assembly was 71.71% compared to the Mollusca_Odb10 gene set. KEGG and REACTOME pathway analyzes revealed that U. duvaucelii shares many genes and pathways with higher vertebrates.

Indexed as

DecapodiformesGene Expression ProfilingTranscriptomeAnimalsIndian Ocean

Identifiers

PMID39550368
PMCPMC11569149

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.