Evidence map›Paper›PMID 39549265›Full record

ArticleG3 (Bethesda, Md.)2025

The genome of the cryopelagic Antarctic bald notothen, Trematomus borchgrevinki.

Niraj Rayamajhi, Angel G Rivera-Colón, Bushra Fazal Minhas, C H Christina Cheng, Julian M Catchen

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Niraj RayamajhiDepartment of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States.ORCID 0000-0001-6597-4955
Angel G Rivera-ColónInstitute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, United States.ORCID 0000-0001-9097-3241
Bushra Fazal MinhasInformatics Program, University of Illinois at Urbana-Champaign, Urbana, IL 61820, United States.ORCID 0000-0003-4777-9026
C H Christina ChengDepartment of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States.ORCID 0000-0001-6308-8685
Julian M CatchenDepartment of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States.ORCID 0000-0002-4798-660X

Funding

AGR-CC-HCCIGERTJCNSF ANT 11-42158NSF DGE 10-69157NSF OPP 1645087
6 · The paper itself

Abstract

The Antarctic bald notothen, Trematomus borchgrevinki (family Nototheniidae) occupies a high latitude, ice-laden environment and represents an extreme example of cold-specialization among fishes. We present the first, high-quality, chromosome-scale genome of a female T. borchgrevinki individual comprised of 23 putative chromosomes, the largest of which is 65 megabasepairs (Mbp) in length. The total length of the genome 935.13 Mbp, composed of 2,094 scaffolds, with a scaffold N50 of 42.67 Mbp. Annotation yielded 22,192 protein-coding genes while 54.75% of the genome was occupied by repetitive elements; an analysis of repeats demonstrated that an expansion occurred in recent time. Conserved synteny analysis revealed that the genome architecture of T. borchgrevinki is largely maintained with other members of the notothenioid clade, although several significant translocations and inversions are present, including the fusion of orthologous chromosomes 8 and 11 into a single element. This genome will serve as a cold-specialized model for comparisons to other members of the notothenioid adaptive radiation.

Indexed as

GenomeAnimalsAntarctic RegionsChromosomesFemaleGenomicsMolecular Sequence AnnotationPerciformesPhylogenyRepetitive Sequences, Nucleic AcidSyntenycryonotothenioidgenome assemblynotothenioidTrematomus borchgrevinki

Identifiers

PMID39549265
PMCPMC11708224

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.