Evidence map›Paper›PMID 39548757›Full record

ArticleProtein science : a publication of the Protein Society2024

Amino acid variability at W194 of Staphylococcus aureus sortase A alters nucleophile specificity.

Hanna M Kodama, Katy M Lindblom, Erich G Walkenhauer, John M Antos, Jeanine F Amacher

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Amino acid variants at the P94 position inbioRxiv : the preprint server for biology · 2026
    Article
  3. A Putative Interaction between the Transmembrane Domains ofThe journal of physical chemistry. B · 2025
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hanna M KodamaDepartment of Chemistry, Western Washington University, Bellingham, Washington, USA.
Katy M LindblomDepartment of Chemistry, Western Washington University, Bellingham, Washington, USA.
Erich G WalkenhauerDepartment of Chemistry, Western Washington University, Bellingham, Washington, USA.
John M AntosDepartment of Chemistry, Western Washington University, Bellingham, Washington, USA.
Jeanine F AmacherDepartment of Chemistry, Western Washington University, Bellingham, Washington, USA.ORCID 0000-0002-3646-7521

Funding

Improved Understanding of Bacterial Sortase Activity Towards Next-Generation Protein EngineeringR15GM154315 · NIGMS · WESTERN WASHINGTON UNIVERSITY · PI AMACHER, JEANINE FAYE, ANTOS, JOHN M · 2024 to 2024
$383k
National Science Foundation CHE-2044958NIGMS NIH HHS R15 GM154315NIH HHS 1R15GM154315-01Research Corporation for Science Advancement
6 · The paper itself

Abstract

Bacterial sortases are a family of cysteine transpeptidases in Gram-positive bacteria of which sortase A (SrtA) enzymes are responsible for ligating proteins to the peptidoglycan layer of the cell surface. Engineered versions of sortases are also used in sortase-mediated ligation (SML) strategies for a variety of protein engineering applications. Although a versatile tool, substrate recognition by Staphylococcus aureus SrtA (saSrtA), the most commonly utilized enzyme in SML, is stringent and relies on an LPXTG pentapeptide motif. Previous structural studies revealed that the requirement of a glycine in the binding motif may be due to potential steric hindrance of amino acids possessing a β-carbon by W194, a tryptophan located in the β7-β8 loop of the enzyme. Here, we measured the effect of seven single point mutants of W194 (A, D, F, G, N, S, Y) saSrtA using a FRET-based activity assay. We found that while the LPXTG motif remains a requirement for initial proteolytic cleavage, the nucleophile specificity of our variants is altered. In particular, W194A and W194S saSrtA recognize a D-Ala nucleophile and are able to perform ligation reactions. Notably, an LPXT(D-Ala) peptide was not cleaved by either mutant enzyme. We hypothesize that these variants may potentially be utilized to develop an irreversible sortase-mediated reaction. Taken together, this experiment reveals new insight into sortase specificity and possible future SML strategies.

Indexed as

AminoacyltransferasesBacterial ProteinsCysteine EndopeptidasesStaphylococcus aureusAmino Acid MotifsAmino Acid SubstitutionModels, MolecularSubstrate SpecificityAminoacyltransferasesBacterial ProteinsCysteine Endopeptidasessortase Aenzymesprotein engineeringprotein structural modelingsortasesstructural biologysubstrate specificity

Identifiers

PMID39548757
PMCPMC11568364

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.