Evidence map›Paper›PMID 39548254›Full record

ArticleScientific reports2024

Comprehensive assessment of cellular senescence in intestinal immunity and biologic therapy response in ulcerative colitis.

Baojia Yao, Yawei Zhang, Qiang Wu, Hengchang Yao, Liangxin Peng, Zhixian Jiang, Lichao Yang, Lianwen Yuan

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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  5. Review
  6. Significance of Malic Enzyme 1 in Cancer: A Review.Current issues in molecular biology · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Baojia YaoDepartment of General Surgery, The Second Xiangya Hospital of Central South University, Changsha, 410011, China.
Yawei ZhangDepartment of General Surgery, The Second Xiangya Hospital of Central South University, Changsha, 410011, China.
Qiang WuDepartment of General Surgery, The Second Xiangya Hospital of Central South University, Changsha, 410011, China.
Hengchang YaoDepartment of General Surgery, The Second Xiangya Hospital of Central South University, Changsha, 410011, China.
Liangxin PengDepartment of General Surgery, The Second Xiangya Hospital of Central South University, Changsha, 410011, China.
Zhixian JiangDepartment of General Surgery, The Second Xiangya Hospital of Central South University, Changsha, 410011, China.
Lichao Yang *Department of General Surgery, The Second Xiangya Hospital of Central South University, Changsha, 410011, China. ylc0312@163.com.
Lianwen Yuan *Department of General Surgery, The Second Xiangya Hospital of Central South University, Changsha, 410011, China. yuanlianwen@csu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ulcerative Colitis (UC) is an inflammatory disorder characterized by chronic intestinal inflammation and immune dysregulation. Despite a clear association between cellular senescence and chronic inflammation and immune dysregulation, the mechanisms underlying cellular senescence in UC remain unclear. We screened differentially expressed genes (DEGs) associated with cellular senescence in multiple UC datasets, performed immune infiltration analysis, and constructed clinical diagnostic models. Additionally, we investigated the relationship between key genes related to cellular senescence and disease remission in UC patients undergoing biologic therapy, validating their expression in a single-cell dataset. We identified six DEGs associated with cellular senescence (TWIST1, IGFBP5, MME, IFNG, ME1, FOS). Immune infiltration results indicated strong correlations of four of these genes with immune cells and pathways. Through WGCNA, GO, and KEGG analyses, we found that gene modules strongly associated with the expression of hub genes in cellular senescence were enriched in inflammation-related pathways. In the single-cell dataset, the expression of these six key genes exhibited similarities with Immune infiltration results. Additionally, we constructed a nomogram using these six genes for diagnosing UC, demonstrating good diagnostic capability and clinical efficacy. Kaplan-Meier survival analysis revealed a significant association between changes in the expression levels of these cell genes and disease remission in UC patients undergoing biologic therapy. This study utilizes bioinformatic analysis and machine learning to identify and analyze features associated with cellular senescence in multiple UC datasets. It provides insights into the role of cellular senescence in the premature onset of intestinal aging in UC and offers new perspectives for exploring novel therapeutic targets.

Indexed as

Cellular SenescenceColitis, UlcerativeBiological TherapyComputational BiologyGene Expression ProfilingGene Regulatory NetworksHumansBiologicsCellular senescenceGEO datasetImmuneInflammatory bowel diseaseUlcerative colitis

Identifiers

PMID39548254
PMCPMC11568168

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.