Evidence map›Paper›PMID 39548104›Full record

ArticleNature communications2024

Cryo-EM characterization of the anydromuropeptide permease AmpG central to bacterial fitness and β-lactam antibiotic resistance.

Helena E Sverak, Luke N Yaeger, Liam J Worrall, Condurache M Vacariu, Amy J Glenwright, Marija Vuckovic, Zayni-Dean Al Azawi, Ryan P Lamers, Victoria A Marko, Clarissa Skorupski and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Regulation of PBP2x Surface Localization byPathogens (Basel, Switzerland) · 2026
    Article
  2. Optimized bacterial expression of a synthetic BRIL antibody.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Bacterial peptidoglycan as a living polymer.Current opinion in chemical biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Helena E SverakDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, Canada.ORCID 0009-0009-8193-2814
Luke N YaegerDepartment of Biochemistry and Biomedical Sciences and the Michael G. DeGroote Institute of Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0001-8179-8330
Liam J WorrallDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, Canada.
Condurache M VacariuDepartment of Chemistry, University of British Columbia, Vancouver, Canada.
Amy J GlenwrightDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, Canada.
Marija VuckovicDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, Canada.
Zayni-Dean Al AzawiDepartment of Biochemistry and Biomedical Sciences and the Michael G. DeGroote Institute of Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada.
Ryan P LamersDepartment of Biochemistry and Biomedical Sciences and the Michael G. DeGroote Institute of Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada.
Victoria A MarkoDepartment of Biochemistry and Biomedical Sciences and the Michael G. DeGroote Institute of Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0002-4323-0004
Clarissa SkorupskiDepartment of Biochemistry and Biomedical Sciences and the Michael G. DeGroote Institute of Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada.
Arvind S SoniDepartment of Chemistry, University of British Columbia, Vancouver, Canada.
Martin E TannerDepartment of Chemistry, University of British Columbia, Vancouver, Canada.ORCID 0000-0002-3224-3491
Lori L BurrowsDepartment of Biochemistry and Biomedical Sciences and the Michael G. DeGroote Institute of Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0003-0838-5040
Natalie Cj StrynadkaDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, Canada. ncjs@mail.ubc.ca.ORCID 0000-0002-4058-9425

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
NIGMS NIH HHS R01 GM129325
6 · The paper itself

Abstract

Bacteria invest significant resources into the continuous creation and tailoring of their essential protective peptidoglycan (PG) cell wall. Several soluble PG biosynthesis products in the periplasm are transported to the cytosol for recycling, leading to enhanced bacterial fitness. GlcNAc-1,6-anhydroMurNAc and peptide variants are transported by the essential major facilitator superfamily importer AmpG in Gram-negative pathogens including Escherichia coli, Klebsiella pneumoniae, Acinetobacter baumannii, and Pseudomonas aeruginosa. Accumulation of GlcNAc-1,6-anhydroMurNAc-pentapeptides also results from β-lactam antibiotic induced cell wall damage. In some species, these products upregulate the β-lactamase AmpC, which hydrolyzes β-lactams to allow for bacterial survival and drug-resistant infections. Here, we have used cryo-electron microscopy and chemical synthesis of substrates in an integrated structural, biochemical, and cellular analysis of AmpG. We show how AmpG accommodates the large GlcNAc-1,6-anhydroMurNAc peptides, including a unique hydrophobic vestibule to the substrate binding cavity, and characterize residues involved in binding that inform the mechanism of proton-mediated transport.

Indexed as

Bacterial ProteinsCryoelectron MicroscopyMembrane Transport ProteinsAcinetobacter baumanniiAnti-Bacterial Agentsbeta-Lactamasesbeta-Lactam Resistancebeta-LactamsCell WallEscherichia coliPeptidoglycanAmpG protein, BacteriaAnti-Bacterial AgentsBacterial Proteinsbeta-Lactamasesbeta-LactamsMembrane Transport ProteinsPeptidoglycan

Identifiers

PMID39548104
PMCPMC11568325

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.