Evidence map›Paper›PMID 39548071›Full record

ArticleNature communications2024

TORC2 inhibition triggers yeast chromosome fragmentation through misregulated Base Excision Repair of clustered oxidation events.

Kenji Shimada, Cleo V D Tarashev, Stephanie Bregenhorn, Christian B Gerhold, Barbara van Loon, Gregory Roth, Verena Hurst, Josef Jiricny, Stephen B Helliwell, Susan M Gasser

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kenji ShimadaFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, Basel, Switzerland.ORCID 0000-0002-6670-3118
Cleo V D TarashevFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, Basel, Switzerland.
Stephanie BregenhornInstitute of Molecular Life Sciences, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland; and Institute of Molecular Cancer Research, University of Zurich, Zurich, Switzerland.
Christian B GerholdFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, Basel, Switzerland.ORCID 0000-0002-9982-9171
Barbara van LoonNorwegian University of Science and Technology; Department of Clinical and Molecular Medicine, Erling Skjalgssonsgatan, Trondheim, Norway.ORCID 0000-0002-7597-207X
Gregory RothFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, Basel, Switzerland.ORCID 0000-0003-0677-3293
Verena HurstFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, Basel, Switzerland.ORCID 0000-0002-8521-1899
Josef JiricnyInstitute of Molecular Life Sciences, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland; and Institute of Molecular Cancer Research, University of Zurich, Zurich, Switzerland.
Stephen B HelliwellNovartis Institutes of Biomedical Research, Novartis Intl. AG, Basel, Switzerland.ORCID 0000-0001-6019-9574
Susan M GasserFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, Basel, Switzerland. susan.gasser@fmi.ch.ORCID 0000-0003-3610-9123

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 31003A_176286
6 · The paper itself

Abstract

Combinational therapies provoking cell death are of major interest in oncology. Combining TORC2 kinase inhibition with the radiomimetic drug Zeocin results in a rapid accumulation of double-strand breaks (DSB) in the budding yeast genome. This lethal Yeast Chromosome Shattering (YCS) requires conserved enzymes of base excision repair. YCS can be attenuated by eliminating three N-glycosylases or endonucleases Apn1/Apn2 and Rad1, which act to convert oxidized bases into abasic sites and single-strand nicks. Adjacent lesions must be repaired in a step-wise fashion to avoid generating DSBs. Artificially increasing nuclear actin by destabilizing cytoplasmic actin filaments or by expressing a nuclear export-deficient actin interferes with this step-wise repair and generates DSBs, while mutants that impair DNA polymerase processivity reduce them. Repair factors that bind actin include Apn1, RFA and the actin-dependent chromatin remodeler INO80C. During YCS, increased INO80C activity could enhance both DNA polymerase processivity and repair factor access to convert clustered lesions into DSBs.

Indexed as

DNA Breaks, Double-StrandedDNA RepairSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsActinsChromosomes, FungalExcision RepairOxidation-ReductionReplication Protein AActinsINO80 complex, S cerevisiaeReplication Protein ARFA1 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID39548071
PMCPMC11568337

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.