Evidence map›Paper›PMID 39547229›Full record

ArticleCell2024

STK19 facilitates the clearance of lesion-stalled RNAPII during transcription-coupled DNA repair.

Diana van den Heuvel, Marta Rodríguez-Martínez, Paula J van der Meer, Nicolas Nieto Moreno, Jiyoung Park, Hyun-Suk Kim, Janne J M van Schie, Annelotte P Wondergem, Areetha D'Souza, George Yakoub and 15 more

Abstract read
In one paragraph

Article in Cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Review
  2. Topology Resetting During Transcription-Coupled Nucleotide Excision Repair.International journal of molecular sciences · 2026
    Review
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  20. Recent progress and future challenges in structure-based protein-protein interaction prediction.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Diana van den HeuvelDepartment of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Marta Rodríguez-MartínezMechanisms of Transcription Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Paula J van der MeerDepartment of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Nicolas Nieto MorenoDepartment of Cellular and Molecular Medicine, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark.
Jiyoung ParkCenter for Genomic Integrity, Institute for Basic Science, Ulsan, Republic of Korea.
Hyun-Suk KimCenter for Genomic Integrity, Institute for Basic Science, Ulsan, Republic of Korea.
Janne J M van SchieDepartment of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Annelotte P WondergemDepartment of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Areetha D'SouzaCenter for Genomic Integrity, Institute for Basic Science, Ulsan, Republic of Korea.
George YakoubDepartment of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Anna E HerlihyMechanisms of Transcription Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Krushanka KashyapDepartment of Cellular and Molecular Medicine, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark.
Thierry BoissièreMechanisms of Transcription Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK; Department of Cellular and Molecular Medicine, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark.
Jane WalkerMechanisms of Transcription Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Richard MitterBioinformatics and Biostatistics, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Katja ApeltDepartment of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands.
Klaas de LintDepartment of Clinical Genetics, Section Oncogenetics, Cancer Center Amsterdam, Amsterdam University Medical Center, Amsterdam, the Netherlands.
Idil KirdökDepartment of Clinical Genetics, Section Oncogenetics, Cancer Center Amsterdam, Amsterdam University Medical Center, Amsterdam, the Netherlands.
Mats LjungmanDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI, USA; Department of Environmental Health Sciences, Rogel Cancer Center and Center for RNA Biomedicine, University of Michigan, Ann Arbor, MI, USA.
Rob M F WolthuisDepartment of Clinical Genetics, Section Oncogenetics, Cancer Center Amsterdam, Amsterdam University Medical Center, Amsterdam, the Netherlands.
Patrick CramerMax Planck Institute for Multidisciplinary Sciences, Department of Molecular Biology, 37077 Göttingen, Germany.
Orlando D SchärerCenter for Genomic Integrity, Institute for Basic Science, Ulsan, Republic of Korea; Department of Biological Sciences, Ulsan National Institute of Science and Technology, Ulsan, Republic of Korea.
Goran KokicMax Planck Institute for Multidisciplinary Sciences, Department of Molecular Biology, 37077 Göttingen, Germany. Electronic address: gkokic@gmail.com.
Jesper Q SvejstrupMechanisms of Transcription Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK; Department of Cellular and Molecular Medicine, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark. Electronic address: jsvejstrup@sund.ku.dk.
Martijn S LuijsterburgDepartment of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: m.luijsterburg@lumc.nl.

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Targeting the RNA Exosome for Cancer TherapeuticsR01CA213214 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LJUNGMAN, MATS, NEAMATI, NOURI · 2019 to 2023
$2.4M
Mapping of Novel Candidate Functional Elements with Bru-Seq TechnologyUM1HG009382 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LJUNGMAN, MATS · 2017 to 2021
$2.3M
NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA213214NHGRI NIH HHS UM1 HG009382Wellcome Trust FC001166
6 · The paper itself

Abstract

Transcription-coupled DNA repair (TCR) removes bulky DNA lesions impeding RNA polymerase II (RNAPII) transcription. Recent studies have outlined the stepwise assembly of TCR factors CSB, CSA, UVSSA, and transcription factor IIH (TFIIH) around lesion-stalled RNAPII. However, the mechanism and factors required for the transition to downstream repair steps, including RNAPII removal to provide repair proteins access to the DNA lesion, remain unclear. Here, we identify STK19 as a TCR factor facilitating this transition. Loss of STK19 does not impact initial TCR complex assembly or RNAPII ubiquitylation but delays lesion-stalled RNAPII clearance, thereby interfering with the downstream repair reaction. Cryoelectron microscopy (cryo-EM) and mutational analysis reveal that STK19 associates with the TCR complex, positioning itself between RNAPII, UVSSA, and CSA. The structural insights and molecular modeling suggest that STK19 positions the ATPase subunits of TFIIH onto DNA in front of RNAPII. Together, these findings provide new insights into the factors and mechanisms required for TCR.

Indexed as

Cryoelectron MicroscopyDNA RepairRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, GeneticDNA DamageDNA HelicasesHumansModels, MolecularProtein Serine-Threonine KinasesTranscription Factor TFIIHUbiquitinationDNA HelicasesProtein Serine-Threonine KinasesRNA Polymerase IISaccharomyces cerevisiae ProteinsTranscription Factor TFIIHCSACSBDNA repairELOF1nucleotide excision repairRNA polymerase IISTK19TFIIHtranscriptionUVSSA

Identifiers

PMID39547229
PMCPMC12287594

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.