Evidence map›Paper›PMID 39546542›Full record

ArticlePLoS pathogens2024

Distinct pathways for evolution of enhanced receptor binding and cell entry in SARS-like bat coronaviruses.

Alexandra L Tse, Cory M Acreman, Inna Ricardo-Lax, Jacob Berrigan, Gorka Lasso, Toheeb Balogun, Fiona L Kearns, Lorenzo Casalino, Georgia L McClain, Amartya Mudry Chandran and 7 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Alexandra L TseDepartment of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.ORCID 0000-0002-1629-6526
Cory M AcremanDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.
Inna Ricardo-LaxLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York, United States of America.ORCID 0000-0002-9590-9692
Jacob BerriganDepartment of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.
Gorka LassoDepartment of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.ORCID 0000-0001-5355-323X
Toheeb BalogunDepartment of Molecular Biology, University of California San Diego, La Jolla, California, United States of America.
Fiona L KearnsDepartment of Molecular Biology, University of California San Diego, La Jolla, California, United States of America.
Lorenzo CasalinoDepartment of Molecular Biology, University of California San Diego, La Jolla, California, United States of America.ORCID 0000-0003-3581-1148
Georgia L McClainLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York, United States of America.
Amartya Mudry ChandranDepartment of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.
Charlotte LemeunierDepartment of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.
Rommie E AmaroDepartment of Molecular Biology, University of California San Diego, La Jolla, California, United States of America.ORCID 0000-0002-9275-9553
Charles M RiceLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York, United States of America.ORCID 0000-0003-3087-8079
Rohit K JangraDepartment of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.ORCID 0000-0002-3119-0869
Jason S McLellanDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.ORCID 0000-0003-3991-542X
Kartik ChandranDepartment of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.ORCID 0000-0003-0232-7077
Emily Happy MillerDepartment of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.

Funding

Project 4-Tracking cytomegalovirus-primed long-lived NK cells in salivary glandP20GM134974 · NIGMS · LOUISIANA STATE UNIV HSC SHREVEPORT · PI Taichiro Nonaka · 2021 to 2026
$15.0M
The longevity and nature of the anti-SARS-CoV-2 cellular and humoral immune responsesP01AI165075 · NIAID · ROCKEFELLER UNIVERSITY · PI BIENIASZ, PAUL D., BJORKMAN, PAMELA J · 2022 to 2023
$10.7M
Medical Scientist Training ProgramT32GM149364 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Myles H. Akabas · 2023 to 2026
$7.5M
Geographic Medicine and Emerging InfectionsT32AI070117 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI WEISS, LOUIS M. · 2008 to 2023
$5.1M
Dissecting the receptor-mediated infection mechanisms of hantavirusesR01AI132633 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CHANDRAN, KARTIK · 2017 to 2021
$3.2M
CTSA K12 Program at Einstein-MontefioreK12TR004411 · NCATS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Deepa Rastogi · 2023 to 2026
$3.0M
Engineering Immunity for Broad Protection Against BetacoronavirusesK08AI180364 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Emily Happy Miller · 2024 to 2026
$599k
Viral and host determinants of susceptibility of diverse hantavirusesR21AI156482 · NIAID · LOUISIANA STATE UNIV HSC SHREVEPORT · PI JANGRA, ROHIT K · 2021 to 2022
$452k
NCATS NIH HHS K12 TR004411NIAID NIH HHS K08 AI180364NIAID NIH HHS P01 AI165075NIAID NIH HHS R01 AI132633NIAID NIH HHS R21 AI156482NIAID NIH HHS T32 AI070117NIGMS NIH HHS P20 GM134974NIGMS NIH HHS T32 GM149364
6 · The paper itself

Abstract

Understanding the zoonotic risks posed by bat coronaviruses (CoVs) is critical for pandemic preparedness. Herein, we generated recombinant vesicular stomatitis viruses (rVSVs) bearing spikes from divergent bat CoVs to investigate their cell entry mechanisms. Unexpectedly, the successful recovery of rVSVs bearing the spike from SHC014-CoV, a SARS-like bat CoV, was associated with the acquisition of a novel substitution in the S2 fusion peptide-proximal region (FPPR). This substitution enhanced viral entry in both VSV and coronavirus contexts by increasing the availability of the spike receptor-binding domain to recognize its cellular receptor, ACE2. A second substitution in the S1 N-terminal domain, uncovered through the rescue and serial passage of a virus bearing the FPPR substitution, further enhanced spike:ACE2 interaction and viral entry. Our findings identify genetic pathways for adaptation by bat CoVs during spillover and host-to-host transmission, fitness trade-offs inherent to these pathways, and potential Achilles' heels that could be targeted with countermeasures.

Indexed as

ChiropteraSpike Glycoprotein, CoronavirusVirus InternalizationAngiotensin-Converting Enzyme 2AnimalsCoronavirus InfectionsHEK293 CellsHumansReceptors, VirusSARS-CoV-2Severe acute respiratory syndrome-related coronavirusAngiotensin-Converting Enzyme 2Receptors, VirusSpike Glycoprotein, Coronavirus

Identifiers

PMID39546542
PMCPMC11602109

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.