Evidence map›Paper›PMID 39545639›Full record

ArticleThe New phytologist2025

Unravelling the different components of nonphotochemical quenching using a novel analytical pipeline.

Lennart A I Ramakers, Jeremy Harbinson, Emilie Wientjes, Herbert van Amerongen

Abstract read
In one paragraph

Article in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lennart A I RamakersLaboratory of Biophysics, Wageningen University, 6708WE, Wageningen, the Netherlands.ORCID 0009-0004-0560-1400
Jeremy HarbinsonLaboratory of Biophysics, Wageningen University, 6708WE, Wageningen, the Netherlands.ORCID 0000-0002-0607-4508
Emilie WientjesLaboratory of Biophysics, Wageningen University, 6708WE, Wageningen, the Netherlands.ORCID 0000-0003-2625-8045
Herbert van AmerongenLaboratory of Biophysics, Wageningen University, 6708WE, Wageningen, the Netherlands.ORCID 0000-0002-9783-2895

Funding

Exacte en Natuurwetenschappen OCENW.GROOT.2019.86
6 · The paper itself

Abstract

Photoprotection in plants includes processes collectively known as nonphotochemical quenching (NPQ), which quench excess excitation-energy in photosystem II. NPQ is triggered by acidification of the thylakoid lumen, which leads to PsbS-protein protonation and violaxanthin de-epoxidase activation, resulting in zeaxanthin accumulation. Despite extensive study, questions persist about the mechanisms of NPQ. We have set up a novel analytical pipeline to disentangle NPQ induction curves measured at many light intensities into a limited number of different kinetic components. To validate the method, we applied it to Chl-fluorescence measurements, which utilised the saturating-pulse methodology, on wild-type (wt) and zeaxanthin-lacking (npq1) Arabidopsis thaliana plants. NPQ induction curves in wt and npq1 can be explained by four components (

Indexed as

ArabidopsisLightPhotosystem II Protein ComplexThylakoidsZeaxanthinsChlorophyllFluorescenceHydrogen-Ion ConcentrationKineticsXanthophyllsChlorophyllPhotosystem II Protein ComplexXanthophyllsZeaxanthinsArabidopsis thalianamultivariate analysisnonphotochemical quenchingPsbSxanthophyll cyclezeaxanthin

Identifiers

PMID39545639
PMCPMC11655427

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.