Evidence map›Paper›PMID 39543621›Full record

ArticleMicrobial cell factories2024

The metabolic engineering of Escherichia coli for the high-yield production of hypoxanthine.

Siyu Zhao, Tangen Shi, Liangwen Li, Zhichao Chen, Changgeng Li, Zichen Yu, Pengjie Sun, Qingyang Xu

Abstract read
In one paragraph

Article in Microbial cell factories, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Growth ofBiomolecules · 2026
    Article
  2. Development of a CRISPR/Cas9 genome editing toolbox forSynthetic and systems biotechnology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Siyu ZhaoCollege of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, P. R. China.
Tangen ShiCollege of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, P. R. China.
Liangwen LiCollege of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, P. R. China.
Zhichao ChenCollege of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, P. R. China.
Changgeng LiCollege of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, P. R. China.
Zichen YuCollege of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, P. R. China.
Pengjie SunCollege of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, P. R. China.
Qingyang XuCollege of Biotechnology, Tianjin University of Science & Technology, Tianjin, 300457, P. R. China. xuqingyang@tust.edu.cn.

Funding

Key Technology Research and Development Program of Shandong Province 2021ZDSYS10
6 · The paper itself

Abstract

backgroundHypoxanthine, prevalent in animals and plants, is used in the production of food additives, nucleoside antiviral drugs, and disease diagnosis. Current biological fermentation methods synthesize quantities insufficient to meet industrial demands. Therefore, this study aimed to develop a strain capable of industrial-scale production of hypoxanthine.

resultsDe novo synthesis of hypoxanthine was achieved by blocking the hypoxanthine decomposition pathway, thus alleviating transcriptional repression and multiple feedback inhibition, and introducing a purine operon from Bacillus subtilis to construct a chassis strain. The effects of knocking out the IMP(Inosine 5'-monophosphate) branch on the growth status and titer of the strain were then investigated, and the effectiveness of adenosine deaminase and adenine deaminase was verified. Overexpressing these enzymes created a dual pathway for hypoxanthine synthesis, enhancing the metabolic flow of hypoxanthine synthesis and preventing auxotrophic strain formation. Introducing IMP-specific 5' -nucleotidase addressed the issue of adenylate accumulation. In addition, the metabolic flow of the guanine branch was dynamically regulated by the guaB gene. The supply of glutamine and aspartic acid precursors was enhanced by introducing an exogenous glnA mutant gene, overexpressing aspC, and replacing the weaker promoter to regulate the aspartic acid branching pathway. Ultimately, fermentation in a 5 L bioreactor for 48 h produced 30.6 g/L hypoxanthine, with a maximum real-time productivity of 1.4 g/L/h, the highest value of hypoxanthine production by microbial fermentation reported so far.

conclusionsThe intracellular purine biosynthesis pathway is extensive and regulated at multiple levels in cells. The IMP branch in the hypoxanthine synthesis pathway has a higher metabolic flux. The current challenge lies in systematically allocating the metabolic flux within the branch pathway to achieve substantial product accumulation. In this study, E. coli was used as the chassis strain to construct a dual pathway for IMP and AMP(Adenosine 5'-monophosphate) synergistic hypoxanthine synthesis and dynamically regulate the guanine branch pathway. Overall, our experimental efforts culminated in a high-yield, plasmid- and defect-free engineered hypoxanthine strain.

Indexed as

Escherichia coliHypoxanthineMetabolic EngineeringAminohydrolasesBacillus subtilisFermentationadenine deaminaseAminohydrolasesHypoxanthineDe novo synthesisDual pathwayDynamic regulationEscherichia coliHypoxanthineMetabolic engineering

Identifiers

PMID39543621
PMCPMC11566304

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.