Evidence map›Paper›PMID 39543491›Full record

ArticleBMC plant biology2024

Comparative analyses of RNA-seq and phytohormone data of sweetpotatoes inoculated with Dickeya dadantii causing bacterial stem and root rot of sweetpotato.

Shu-Yan Xie, Boping Fang, Jingyi Chen, Nan Zhao, Shuyun Lin, Tingting Ma, Lifei Huang

Abstract readComparative Study
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Shu-Yan XieCrops Research Institute, Guangdong Academy of Agricultural Sciences & Key Laboratory of Crops Genetics & Improvement of Guangdong Province, Guangzhou, 510640, China.
Boping FangCrops Research Institute, Guangdong Academy of Agricultural Sciences & Key Laboratory of Crops Genetics & Improvement of Guangdong Province, Guangzhou, 510640, China.
Jingyi ChenCrops Research Institute, Guangdong Academy of Agricultural Sciences & Key Laboratory of Crops Genetics & Improvement of Guangdong Province, Guangzhou, 510640, China.
Nan ZhaoCrops Research Institute, Guangdong Academy of Agricultural Sciences & Key Laboratory of Crops Genetics & Improvement of Guangdong Province, Guangzhou, 510640, China.
Shuyun LinCrops Research Institute, Guangdong Academy of Agricultural Sciences & Key Laboratory of Crops Genetics & Improvement of Guangdong Province, Guangzhou, 510640, China.
Tingting MaCrops Research Institute, Guangdong Academy of Agricultural Sciences & Key Laboratory of Crops Genetics & Improvement of Guangdong Province, Guangzhou, 510640, China.
Lifei HuangCrops Research Institute, Guangdong Academy of Agricultural Sciences & Key Laboratory of Crops Genetics & Improvement of Guangdong Province, Guangzhou, 510640, China. huanglifei@gdaas.cn.

Funding

CARS-10-Sweetpotato, and the Sweetpotato Potato Innovation Team of the Modern Agricultural Industry Technology System in Guangdong Province 2023KJ111
6 · The paper itself

Abstract

Bacterial stem and root rot (BSRR) in sweetpotato caused by Dickeya dadantii is one of the ten major diseases of sweetpotatoes in China. However, the molecular mechanism underlying the resistance of sweetpotato to D. dadantii remains unclear. This study adopted a resistance identification assay that conformed Guangshu87 (GS87) as BSRR-resistant and Xinxiang (XX) as susceptible. Compared to XX, GS87 effectively prevented the invasion and dissemination of D. dadantii in planta. An RNA sequencing (RNA-seq) analysis identified 54,844 expressed unigenes between GS87 and XX at four different stages. Further, it revealed that GS87 was more able to regulate the expressions of more unigenes after the inoculation with D. dadantii, including resistance (R) and transcription factors (TF) genes. Moreover, content measurements of disease resistance-related phytohormones showed that both jasmonic acids (JAs) and salicylic acids (SAs) accumulated in D. dadantii-inoculated sweetpotatoes, and JAs may negatively regulate sweetpotato resistance against D. dadantii and accumulated faster than SAs. Meanwhile, determinations of ROS production rate and relevant enzymatic/non-enzymatic activity highlighted the vital roles of reactive oxygen species (ROS) and superoxide dismutase (SOD) in confering GS87 resistance against D. dadantii. Additionally, several hub genes with high connectivity were highlighted through Protein-Protein interaction (PPI) network analysis. In summary, the findings in this study contribute to the understanding of the different responses of resistant and susceptible sweetpotato cultivars to D. dadantii infection, and it also provide the first insight into the relevant candidate genes and phytohormones involved in the resistance of sweetpotato to D. dadantii.

Indexed as

DickeyaDisease ResistanceIpomoea batatasPlant DiseasesPlant Growth RegulatorsCyclopentanesGene Expression Regulation, PlantOxylipinsPlant RootsPlant StemsRNA-SeqCyclopentanesjasmonic acidOxylipinsPlant Growth RegulatorsDickeya dadantiiPhytohormoneReactive oxygen speciesRNA sequencingSuperoxide dismutaseSweetpotato

Identifiers

PMID39543491
PMCPMC11566469

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.