Evidence map›Paper›PMID 39543477›Full record

ArticleBMC plant biology2024

Comparative analysis of IRE1s in plants: insights into heat stress adaptation in Triticum aestivum.

Amandeep Singh, Harsha Samtani, Himanshi Gangwar, Aishwarye Sharma, Vandana Jaiswal, Ivica Djalovic, P V Vara Prasad, Vijay Gahlaut

Abstract readComparative Study
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Amandeep Singh *Department of Biotechnology, Panjab University, Chandigarh, Punjab, 160014, India.
Harsha Samtani *National Institute of Plant Genome Research, New Delhi, 110067, India.
Himanshi GangwarBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India.
Aishwarye SharmaNational Institute of Plant Genome Research, New Delhi, 110067, India.
Vandana JaiswalBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India.
Ivica DjalovicInstitute of Field and Vegetable Crops, National Institute of the Republic of Serbia, Maxim Gorki 30, Novi Sad, 21000, Serbia.
P V Vara PrasadDepartment of Agronomy, Kansas State University, Manhattan, KS, 66506, USA.
Vijay GahlautDepartment of Biotechnology & University Center for Research and Development, Chandigarh University, Gharuan, Mohali, Punjab, 140413, India. zone4vijay@gmail.com.

Funding

Science and Engineering Research Board SRG/2023/000320
6 · The paper itself

Abstract

backgroundThe unfolded protein response (UPR) pathway serves as a crucial mechanism enabling plants to perceive, respond to, and shield themselves from adverse environmental conditions. Inositol-requiring enzyme 1 (IRE1) is one of the key players of the UPR, and resides in the endoplasmic reticulum (ER) within the cell. This study provides a comprehensive analysis of 195 IRE1 genes across 90 diverse plant species, with a focus on their identification and characterization.

resultsTo decipher the functions of IRE1 family members, we investigated the evolution and spread of IREs in plants and analysed their structural and localization characteristics. Our detailed cis-element analysis revealed unique IRE1 regulation patterns in different plant species. Furthermore, gene expression analysis revealed tissue-specific and heat stress-responsive expression patterns of TaIRE1s, which were subsequently confirmed via quantitative gene expression analysis. TaIRE1-6A was upregulated in response to dithiothreitol (DTT) treatment as well as heat stress. This finding suggests that IRE1 might play a role in linking the UPR pathway and the heat stress response (HSR).

conclusionsOur findings provide a comprehensive understanding of the evolution and expansion of IRE1 genes in different plant species. These findings provide a foundation for further in-depth research on the functional diversity of IREs in nutritious crops following polyploidization. By linking the UPR with HSR, IRE1 could be a key contributor to wheat's resilience against heat stress. Additionally, this connection offers important insights for future functional studies in other crops. Thus, this knowledge could be used for engineering climate resilience in crops such as wheat.

Indexed as

Heat-Shock ResponsePlant ProteinsTriticumGene Expression Regulation, PlantGenes, PlantPhylogenyUnfolded Protein ResponsePlant ProteinsCis-acting regulatory elementsGene structureHeat stress response (HSR)PhylogeneticsPolyploidization

Identifiers

PMID39543477
PMCPMC11566738

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.