Evidence map›Paper›PMID 39543119›Full record

ArticleNature communications2024

Unravelling mutational signatures with plasma circulating tumour DNA.

Sebastian Hollizeck, Ning Wang, Stephen Q Wong, Cassandra Litchfield, Jerick Guinto, Sarah Ftouni, Richard Rebello, Sehrish Kanwal, Ruining Dong, Sean Grimmond and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Cancer-Like Fragmentomic Characteristics of Somatic Variants in Cell-Free DNA.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Review
  5. Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sebastian Hollizeck *Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.ORCID 0000-0002-9504-3497
Ning Wang *Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Stephen Q WongPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Cassandra LitchfieldPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Jerick GuintoPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Sarah FtouniPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Richard RebelloCentre for Cancer Research, The University of Melbourne, Melbourne, VIC, Australia.ORCID 0000-0001-6271-6678
Sehrish KanwalCentre for Cancer Research, The University of Melbourne, Melbourne, VIC, Australia.ORCID 0000-0002-5044-4692
Ruining DongCentre for Cancer Research, The University of Melbourne, Melbourne, VIC, Australia.ORCID 0000-0003-1433-0484
Sean GrimmondCentre for Cancer Research, The University of Melbourne, Melbourne, VIC, Australia.ORCID 0000-0002-8102-7998
Shahneen SandhuPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Linda MileshkinPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.ORCID 0000-0001-6826-6014
Richard W TothillSir Peter MacCallum Department of Oncology, The University of Melbourne, Melbourne, VIC, Australia.ORCID 0000-0003-4522-1184
Dineika ChandranandaPeter MacCallum Cancer Centre, Melbourne, VIC, Australia. Dineika.Chandrananda@petermac.org.ORCID 0000-0002-8834-9500
Sarah-Jane DawsonPeter MacCallum Cancer Centre, Melbourne, VIC, Australia. Sarah-Jane.Dawson@petermac.org.ORCID 0000-0002-8276-0374

Funding

Department of Health | National Health and Medical Research Council (NHMRC) 1196755Department of Health | National Health and Medical Research Council (NHMRC) 2019655
6 · The paper itself

Abstract

The use of circulating tumour DNA (ctDNA) to profile mutational signatures represents a non-invasive opportunity for understanding cancer mutational processes. Here we present MisMatchFinder, a liquid biopsy approach for mutational signature detection using low-coverage whole-genome sequencing of ctDNA. Through analysis of 375 plasma samples across 9 cancers, we demonstrate that MisMatchFinder accurately infers single-base and doublet-base substitutions, as well as insertions and deletions to enhance the detection of ctDNA and clinically relevant mutational signatures.

Indexed as

Circulating Tumor DNAMutationNeoplasmsBiomarkers, TumorDNA Mutational AnalysisDNA, NeoplasmHumansLiquid BiopsyWhole Genome SequencingBiomarkers, TumorCirculating Tumor DNADNA, Neoplasm

Identifiers

PMID39543119
PMCPMC11564803

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.