Evidence map›Paper›PMID 39543117›Full record

ArticleNature communications2024

HOT3/eIF5B1 confers Kozak motif-dependent translational control of photosynthesis-associated nuclear genes for chloroplast biogenesis.

Runlai Hang, Hao Li, Wenjing Liu, Runyu Wang, Hao Hu, Meng Chen, Chenjiang You, Xuemei Chen

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. RNA regulation in plants.Science China. Life sciences · 2026
    Review
  2. Review
  3. Translational landscape during seed germination revealed by ribosome profiling.The Plant journal : for cell and molecular biology · 2026
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Runlai HangState Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking University, 100871, Beijing, China. hangrl200@163.com.ORCID 0000-0002-2981-6121
Hao LiState Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking University, 100871, Beijing, China.
Wenjing LiuState Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking University, 100871, Beijing, China.
Runyu WangState Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking University, 100871, Beijing, China.
Hao HuState Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking University, 100871, Beijing, China.ORCID 0000-0002-0614-3921
Meng ChenDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, Riverside, CA, 92521, USA.ORCID 0000-0003-0351-5897
Chenjiang YouCollege of Life Sciences, Guangdong Provincial Key Laboratory for the Development Biology and Environmental Adaptation of Agricultural Organisms, South China Agricultural University, Guangzhou, Guangdong, 510642, China. cjyou@scau.edu.cn.ORCID 0000-0002-9935-1892
Xuemei ChenState Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking University, 100871, Beijing, China. xuemei.chen@pku.edu.cn.ORCID 0000-0002-5209-1157

Funding

Regulation of APETALA2 in flower development in ArabidopsisR01GM061146 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2000 to 2022
$6.5M
Genetic Characterization of Phytochrome Nuclear Bodies in Plant Light SignalingR01GM087388 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2010 to 2023
$5.8M
Mechanism of nucleus-to-plastid light signaling in controlling plastid transcriptionR01GM132765 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Meng Chen · 2020 to 2026
$2.3M
Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) GM061146National Natural Science Foundation of China (National Science Foundation of China) 32170334NIGMS NIH HHS R01 GM061146NIGMS NIH HHS R01 GM087388NIGMS NIH HHS R01 GM132765
6 · The paper itself

Abstract

Photosynthesis requires chloroplasts, in which most proteins are nucleus-encoded and produced via cytoplasmic translation. The translation initiation factor eIF5B gates the transition from initiation (I) to elongation (E), and the Kozak motif is associated with translation efficiency, but their relationship is previously unknown. Here, with ribosome profiling, we determined the genome-wide I-E transition efficiencies. We discovered that the most prevalent Kozak motif is associated with high I-E transition efficiency in Arabidopsis, rice, and wheat, thus implicating the potential of the Kozak motif in facilitating the I-E transition. Indeed, the effects of Kozak motifs in promoting translation depend on HOT3/eIF5B1 in Arabidopsis. HOT3 preferentially promotes the translation of photosynthesis-associated nuclear genes in a Kozak motif-dependent manner, which explains the chloroplast defects and reduced photosynthesis activity of hot3 mutants. Our study linked the Kozak motif to eIF5B-mediated I-E transition during translation and uncovered the function of HOT3 in the cytoplasmic translational control of chloroplast biogenesis and photosynthesis.

Indexed as

ArabidopsisArabidopsis ProteinsChloroplastsEukaryotic Initiation FactorsGene Expression Regulation, PlantPhotosynthesisProtein BiosynthesisTriticumAmino Acid MotifsCell NucleusMutationOryzaRibosomesArabidopsis Proteinseukaryotic initiation factor-5BEukaryotic Initiation Factors

Identifiers

PMID39543117
PMCPMC11564774

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.