Evidence map›Paper›PMID 39543096›Full record

ArticleNature communications2024

The emergence of Sox and POU transcription factors predates the origins of animal stem cells.

Ya Gao, Daisylyn Senna Tan, Mathias Girbig, Haoqing Hu, Xiaomin Zhou, Qianwen Xie, Shi Wing Yeung, Kin Shing Lee, Sik Yin Ho, Vlad Cojocaru and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ya Gao *School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.ORCID 0009-0003-7989-8756
Daisylyn Senna Tan *School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.ORCID 0000-0002-9768-0756
Mathias Girbig *Evolutionary Biochemistry Group, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID 0000-0003-3442-5448
Haoqing HuSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.
Xiaomin ZhouDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong SAR, China.
Qianwen XieDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong SAR, China.ORCID 0000-0003-3351-3227
Shi Wing YeungSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.
Kin Shing LeeTransgenic Core Facility of the Centre for Comparative Medicine Research, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.
Sik Yin HoSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.ORCID 0009-0007-6011-2548
Vlad CojocaruSTAR-UBB Institute, Babeş-Bolyai University, Cluj-Napoca, Romania.ORCID 0000-0003-0886-3401
Jian YanDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong SAR, China.ORCID 0000-0002-1267-2870
Georg K A HochbergEvolutionary Biochemistry Group, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID 0000-0002-7155-0451
Alex de MendozaSchool of Biological and Behavioural Sciences, Queen Mary University of London, London, UK. a.demendozasoler@qmul.ac.uk.ORCID 0000-0002-6441-6529
Ralf JauchSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China. ralf@hku.hk.ORCID 0000-0002-6590-9579

Funding

Research Grants Council, University Grants Committee (RGC, UGC) C7064-22G
6 · The paper itself

Abstract

Stem cells are a hallmark of animal multicellularity. Sox and POU transcription factors are associated with stemness and were believed to be animal innovations, reported absent in their unicellular relatives. Here we describe unicellular Sox and POU factors. Choanoflagellate and filasterean Sox proteins have DNA-binding specificity similar to mammalian Sox2. Choanoflagellate-but not filasterean-Sox can replace Sox2 to reprogram mouse somatic cells into induced pluripotent stem cells (iPSCs) through interacting with the mouse POU member Oct4. In contrast, choanoflagellate POU has a distinct DNA-binding profile and cannot generate iPSCs. Ancestrally reconstructed Sox proteins indicate that iPSC formation capacity is pervasive among resurrected sequences, thus loss of Sox2-like properties fostered Sox family subfunctionalization. Our findings imply that the evolution of animal stem cells might have involved the exaptation of a pre-existing set of transcription factors, where pre-animal Sox was biochemically similar to extant Sox, whilst POU factors required evolutionary innovations.

Indexed as

Induced Pluripotent Stem CellsSOXB1 Transcription FactorsSOX Transcription FactorsAnimalsCellular ReprogrammingEvolution, MolecularHumansMiceOctamer Transcription Factor-3PhylogenyPOU Domain FactorsStem CellsOctamer Transcription Factor-3Pou5f1 protein, mousePOU Domain FactorsSOXB1 Transcription FactorsSOX Transcription Factors

Identifiers

PMID39543096
PMCPMC11564870

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.