Evidence map›Paper›PMID 39543004›Full record

ArticleBiochemical genetics2025

Codon Usage Pattern and its Influencing Factors for Mitochondrial CO Genes Among Different Subfamilies of Cerambycidae.

Yuyang Zhang, Huanxi Yu, Buddhi Dayananda, Tao Yu

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Article in Biochemical genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

4 authors.

Yuyang ZhangThe National-Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology On Characteristic Fruit Trees, College of Horticulture and Forestry Sciences, Tarim University, Alar, 843300, China.
Huanxi YuMinistry of Ecology and Environment of the People's Republic of China, Nanjing Institute of Environmental Sciences, Nanjing, China.
Buddhi DayanandaSchool of Agriculture and Food Sciences, The University of Queensland, Brisbane, QLD, 4072, Australia.
Tao YuGuizhou Provincial Key Laboratory for Rare Animal and Economic Insect of the Mountainous Region, Guiyang University, Guiyang, 550005, China. yutao123@bjfu.edu.cn.

Funding

Key areas of science and technology research plan 2023AB004-04PhD Project of President's Fund TDZKBS202105The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in South Xinjiang FE202201
6 · The paper itself

Abstract

This study examined nucleotide composition and codon usage of mitochondrial CO (cytochrome oxidase) genes from four subfamilies of Cerambycidae. Nucleotide composition analysis of the CO genes revealed an AT-rich pattern in the four subfamilies of Cerambycidae. Furthermore, by analyzing the correlation between the overall nucleotide composition of CO genes and the nucleotide composition of the 3rd codon, we found that mutation pressure and natural selection were the key factors affected the CUB. The regression of GC12 (The average of GC content of the entire gene first and second codon positions) vs GC3 (GC content of the entire gene third codon positions) scattered to a limited value, and all CO genes slope of the regression line was all less than 0.5, indicated that natural selection might have played a significant role in shaping the codon usage bias. ENC plot analysis further supported the predominant influence of natural selection on CUB, aligning with the findings from neutral plot analyses. These novel insights into the codon evolution of CO genes within Cerambycidae significantly contribute to our understanding of codon evolution.

Indexed as

CodonCodon UsageColeopteraElectron Transport Complex IVGenes, MitochondrialAnimalsBase CompositionEvolution, MolecularSelection, GeneticCodonElectron Transport Complex IVCerambycidaeCodon usage biasCO geneMutation pressureNatural selection

Identifiers

PMID39543004

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