Evidence map›Paper›PMID 39541547›Full record

ArticleJournal of the American Chemical Society2024

Scalable Thiol Reactivity Profiling Identifies Azetidinyl Oxadiazoles as Cysteine-Targeting Electrophiles.

Fereshte Ghorbani, Shaochen You, Gennadii A Grabovyi, Mannkyu Hong, Garrett Lindsey, Arnab K Chatterjee, Michael J Bollong

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Fereshte GhorbaniDepartment of Chemistry, Scripps Research, San Diego, California 92037, United States.
Shaochen YouDepartment of Chemistry, Scripps Research, San Diego, California 92037, United States.ORCID 0009-0009-8849-7114
Gennadii A GrabovyiCalibr-Skaggs Institute for Innovative Medicines, Scripps Research, San Diego, California 92037, United States.ORCID 0000-0001-8999-9532
Mannkyu HongDepartment of Chemistry, Scripps Research, San Diego, California 92037, United States.
Garrett LindseyDepartment of Chemistry, Scripps Research, San Diego, California 92037, United States.
Arnab K ChatterjeeORCID 0000-0001-5171-7982
Michael J BollongDepartment of Chemistry, Scripps Research, San Diego, California 92037, United States.ORCID 0000-0001-9439-1476

Funding

Methods and approaches to expand the pharmacological toolsetR35GM146865 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI Michael J Bollong · 2022 to 2026
$2.3M
NIGMS NIH HHS R35 GM146865
6 · The paper itself

Abstract

Cysteine reactive groups are a mainstay in the design of covalent drugs and probe molecules, yet only a handful of electrophiles are routinely used to target this amino acid. Here, we report the development of scalable thiol reactivity (STRP), a method which enables the facile interrogation of large chemical libraries for intrinsic reactivity with cysteine. High throughput screening using STRP identified the azetidinyl oxadiazole as a moiety that selectively reacts with cysteine through a ring opening-based mechanism, capable of covalently engaging cysteine residues broadly across the human proteome. We show the utility of this reactive group with the discovery of an azetidinyl oxadiazole containing a small molecule that augments the catalytic activity of the deubiquitinase UCHL1 in vitro and in cells by covalently modifying a cysteine distal to its enzymatic active site. This study adds a novel cysteine targeting group to the electrophilic lexicon and provides robust methodology to rapidly surveil libraries for reactivity with cysteine.

Indexed as

AzetidinesCysteineOxadiazolesSulfhydryl CompoundsHigh-Throughput Screening AssaysHumansMolecular StructureSmall Molecule LibrariesAzetidinesCysteineOxadiazolesSmall Molecule LibrariesSulfhydryl Compounds

Identifiers

PMID39541547
PMCPMC11995717

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.