Evidence map›Paper›PMID 39538304›Full record

ArticlePlant methods2024

BerryPortraits: Phenotyping Of Ripening Traits cranberry (Vaccinium macrocarpon Ait.) with YOLOv8.

Jenyne Loarca, Tyr Wiesner-Hanks, Hector Lopez-Moreno, Andrew F Maule, Michael Liou, Maria Alejandra Torres-Meraz, Luis Diaz-Garcia, Jennifer Johnson-Cicalese, Jeffrey Neyhart, James Polashock and 7 more

Erratum issuedAbstract read
In one paragraph

Article in Plant methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Jenyne LoarcaDepartment of Plant and Agroecosystem Sciences, University of Wisconsin-Madison, Madison, WI, USA. jloarca@wisc.edu.ORCID http://orcid.org/0000-0002-3661-3795
Tyr Wiesner-HanksCornell University-Breeding Insight, Ithaca, NY, USA. tw372@cornell.edu.ORCID http://orcid.org/0000-0002-3280-5749
Hector Lopez-MorenoDepartment of Plant and Agroecosystem Sciences, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0009-0002-3223-447X
Andrew F MauleDepartment of Plant and Agroecosystem Sciences, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-3187-1461
Michael LiouDepartment of Statistics, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-0035-957X
Maria Alejandra Torres-MerazDepartment of Plant and Agroecosystem Sciences, University of Wisconsin-Madison, Madison, WI, USA.
Luis Diaz-GarciaDepartment of Plant and Agroecosystem Sciences, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-3984-5516
Jennifer Johnson-CicalesePhillip E. Marucci Center for Blueberry and Cranberry Research & Extension, Chatsworth, NJ, USA.
Jeffrey NeyhartPhillip E. Marucci Center for Blueberry and Cranberry Research & Extension, Chatsworth, NJ, USA.ORCID http://orcid.org/0000-0002-1991-5310
James PolashockPhillip E. Marucci Center for Blueberry and Cranberry Research & Extension, Chatsworth, NJ, USA.
Gina M SideliPhillip E. Marucci Center for Blueberry and Cranberry Research & Extension, Chatsworth, NJ, USA.ORCID http://orcid.org/0000-0003-1056-1496
Christopher F StrockCornell University-Breeding Insight, Ithaca, NY, USA.ORCID http://orcid.org/0000-0003-1432-8130
Craig T BeilCornell University-Breeding Insight, Ithaca, NY, USA. ctb94@cornell.edu.ORCID http://orcid.org/0000-0002-1756-9987
Moira J Sheehan *Cornell University-Breeding Insight, Ithaca, NY, USA. moirasheehan@cornell.edu.ORCID http://orcid.org/0000-0002-3400-2165
Massimo IorizzoDepartment of Horticultural Science, North Carolina State University, Raleigh, NC, USA.ORCID http://orcid.org/0000-0002-0032-8247
Amaya Atucha *Department of Plant and Agroecosystem Sciences, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-8921-5096
Juan Zalapa *Department of Plant and Agroecosystem Sciences, University of Wisconsin-Madison, Madison, WI, USA. juan.zalapa@usda.gov.ORCID http://orcid.org/0000-0001-8840-3565

Funding

National Institute of Food and Agriculture 2022-67012-37202U.S. Department of Agriculture 8062-21000-052-003-AU.S. Department of Agriculture USDA, 8062-21000-052-002-AU.S. Department of Agriculture,United States 8062-21000-043-004-AVaccinium Coordinated Agriculture Project (VacCAP) 2019-51181-30015
6 · The paper itself

Abstract

BerryPortraits (Phenotyping of Ripening Traits) is open source Python-based image-analysis software that rapidly detects and segments berries and extracts morphometric data on fruit quality traits such as berry color, size, shape, and uniformity. Utilizing the YOLOv8 framework and community-developed, actively-maintained Python libraries such as OpenCV, BerryPortraits software was trained on 512 postharvest images (taken under controlled lighting conditions) of phenotypically diverse cranberry populations (Vaccinium macrocarpon Ait.) from the two largest public cranberry breeding programs in the U.S. The implementation of CIELAB, an intuitive and perceptually uniform color space, enables differentiation between berry color and berry brightness, which are confounded in classic RGB color channel measurements. Furthermore, computer vision enables precise and quantifiable color phenotyping, thus facilitating inclusion of researchers and data analysts with color vision deficiency. BerryPortraits is a phenotyping tool for researchers in plant breeding, plant genetics, horticulture, food science, plant physiology, plant pathology, and related fields. BerryPortraits has strong potential applications for other specialty crops such as blueberry, lingonberry, caneberry, grape, and more. As an open source phenotyping tool based on widely-used python libraries, BerryPortraits allows anyone to use, fork, modify, optimize, and embed this software into other tools or pipelines.

Indexed as

Computer visionDigital phenotypingFruit qualityImage-based phenotypingImage segmentationPlant breedingPomology

Identifiers

PMID39538304
PMCPMC11562335

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.