Evidence map›Paper›PMID 39538264›Full record

ArticleVirology journal2024

Genomic epidemiology of early SARS-CoV-2 transmission dynamics in Bangladesh.

L Carnegie, J T McCrone, L du Plessis, M Hasan, M Z Ali, R Begum, M Z Hassan, S Islam, M H Rahman, A S M Uddin and 21 more

Abstract read
In one paragraph

Article in Virology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

L Carnegie *Department of Pathobiology and Population Sciences, Royal Veterinary College (RVC), Hatfield, Hertfordshire, UK. lcarnegie20@rvc.ac.uk.
J T McCroneInstitute of Ecology and Evolution, University of Edinburgh, King's Buildings, Edinburgh, UK.
L du PlessisDepartment of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland.
M HasanBangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
M Z AliBangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
R BegumBangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
M Z HassanBangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
S IslamBangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
M H RahmanBangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
A S M UddinBangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
M S SarkerBangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
T DasChattogram Veterinary and Animal Sciences University (CVASU), Khulshi, Chattogram, Bangladesh.
M HossainNSU Genome Research Institute (NGRI), North South University, Bashundhara, Dhaka, Bangladesh.
M KhanBangladesh Reference Institute for Chemical Measurements (BRiCM), Dhanmondi, Dhaka, Bangladesh.
M H RazuBangladesh Reference Institute for Chemical Measurements (BRiCM), Dhanmondi, Dhaka, Bangladesh.
A AkramNational Institute of Laboratory Medicine and Referral Centre (NILMRC), Agargoan, Dhaka, Bangladesh.
S ArinaNational Institute of Laboratory Medicine and Referral Centre (NILMRC), Agargoan, Dhaka, Bangladesh.
E HoqueNational Institute of Laboratory Medicine and Referral Centre (NILMRC), Agargoan, Dhaka, Bangladesh.
M M A MollaNational Institute of Laboratory Medicine and Referral Centre (NILMRC), Agargoan, Dhaka, Bangladesh.
T NafisaaNational Institute of Laboratory Medicine and Referral Centre (NILMRC), Agargoan, Dhaka, Bangladesh.
P AngraCenters for Disease Control and Prevention (CDC), Atlanta, GA, USA.
A RambautInstitute of Ecology and Evolution, University of Edinburgh, King's Buildings, Edinburgh, UK.
S T PullanUnited Kingdom Health Security Agency (UKHSA), Porton Down, Salisbury, UK.
K L OsmanUnited Kingdom Health Security Agency (UKHSA), Porton Down, Salisbury, UK.
M A HoqueChattogram Veterinary and Animal Sciences University (CVASU), Khulshi, Chattogram, Bangladesh.
P BiswasChattogram Veterinary and Animal Sciences University (CVASU), Khulshi, Chattogram, Bangladesh.
M S FloraNational Institute of Preventive and Social Medicine (NIPSOM), Ministry of Health and Family Welfare, Dhaka, Bangladesh.
J RaghwaniDepartment of Pathobiology and Population Sciences, Royal Veterinary College (RVC), Hatfield, Hertfordshire, UK.
G FourniéDepartment of Pathobiology and Population Sciences, Royal Veterinary College (RVC), Hatfield, Hertfordshire, UK.
M A Samad *Bangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh. msamad@blri.gov.bd.
S C Hill *Department of Pathobiology and Population Sciences, Royal Veterinary College (RVC), Hatfield, Hertfordshire, UK. sahill@rvc.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/T008709/1Combating the threats of antimicrobial resistance and zoonotic diseases to achieve the GHSA in Bangladesh NU2GGH002077UK Research and Innovation BB/S011269/1Wellcome TrustWellcome Trust 220414/Z/20/ZZoonosis and Transboundary Animal Diseases Prevention and Control project 223038200
6 · The paper itself

Abstract

backgroundGenomic epidemiology has helped reconstruct the global and regional movement of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, there is still a lack of understanding of SARS-CoV-2 spread in some of the world's least developed countries (LDCs).

methodsTo begin to address this disparity, we studied the transmission dynamics of the virus in Bangladesh during the country's first COVID-19 wave by analysing case reports and whole-genome sequences from all eight divisions of the country.

resultsWe detected > 50 virus introductions to the country during the period, including during a period of national lockdown. Additionally, through discrete phylogeographic analyses, we identified that geographical distance and population -density and/or -size influenced virus spatial dispersal in Bangladesh.

conclusionsOverall, this study expands our knowledge of SARS-CoV-2 genomic epidemiology in Bangladesh, shedding light on crucial transmission characteristics within the country, while also acknowledging resemblances and differences to patterns observed in other nations.

Indexed as

COVID-19Genome, ViralPhylogeographySARS-CoV-2AdolescentAdultBangladeshChildFemaleGenomicsHumansMaleMiddle AgedMolecular EpidemiologyPhylogenyWhole Genome SequencingBangladeshGenomic epidemiologyPhylodynamicsSARS-CoV-2

Identifiers

PMID39538264
PMCPMC11562509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.