Evidence map›Paper›PMID 39537610›Full record

ArticleNature communications2024

Catalase activity deficiency sensitizes multidrug-resistant Mycobacterium tuberculosis to the ATP synthase inhibitor bedaquiline.

Boatema Ofori-Anyinam, Meagan Hamblin, Miranda L Coldren, Barry Li, Gautam Mereddy, Mustafa Shaikh, Avi Shah, Courtney Grady, Navpreet Ranu, Sean Lu and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Mutations inInfection and drug resistance · 2026
    Article
  9. Metabolic rewiring of isoniazid sensitivity inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Genetic determinants ofMicrobiology spectrum · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Resistance phenotypes and genomic features ofFrontiers in cellular and infection microbiology · 2025
    Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Boatema Ofori-AnyinamRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, 07103, USA.
Meagan HamblinInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Miranda L ColdrenCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, 98105, USA.
Barry LiRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, 07103, USA.ORCID 0000-0003-1102-561X
Gautam MereddyRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, 07103, USA.
Mustafa ShaikhRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, 07103, USA.
Avi ShahRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, 07103, USA.
Courtney GradyRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, 07103, USA.
Navpreet RanuInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Sean LuRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, 07103, USA.
Paul C BlaineyInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.ORCID 0000-0002-4889-8783
Shuyi MaCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, 98105, USA.ORCID 0000-0003-0783-1328
James J CollinsInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.ORCID 0000-0002-5560-8246
Jason H YangRuy V. Lourenço Center for Emerging and Re-Emerging Pathogens, Rutgers New Jersey Medical School, Newark, NJ, 07103, USA. jason.y@rutgers.edu.ORCID 0000-0003-0921-4657

Funding

Center for Cell CircuitsRM1HG006193 · NHGRI · BROAD INSTITUTE, INC. · PI BLAINEY, PAUL CLARK, HACOHEN, NIR · 2016 to 2020
$14.9M
Systems Biology CoreU19AI162598 · NIAID · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI ALLAND, DAVID, ELLNER, JERROLD J. · 2021 to 2025
$13.9M
Genetic, Metabolic and Regulatory Control of MIC and Relapse in M. tuberculosisR01AI146194 · NIAID · UNIVERSITY OF WASHINGTON · PI ALLAND, DAVID, SHERMAN, DAVID R · 2020 to 2024
$4.1M
Network Dissection of Host-Pathogen Interactions in Mycobacterium tuberculosis InfectionDP2AI164249 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI MA, SHUYI · 2021 to 2025
$2.8M
Low-input multiplex isolation and profiling of human immune cell subsets using an integrated microfluidics deviceU24AI118668 · NIAID · BROAD INSTITUTE, INC. · PI HACOHEN, NIR · 2015 to 2019
$2.0M
Effects of Host Metabolic Variation on Antibiotic SusceptibilityR00GM118907 · NIGMS · RBHS-NEW JERSEY MEDICAL SCHOOL · PI YANG, JASON HUNG-YING · 2020 to 2022
$747k
Microfluidic sample preparation for genomic sequencing of clinical pathogen isolatesR21AI121932 · NIAID · BROAD INSTITUTE, INC. · PI BLAINEY, PAUL CLARK, GRAD, YONATAN H · 2016 to 2017
$496k
NHGRI NIH HHS RM1 HG006193NIAID NIH HHS DP2 AI164249NIAID NIH HHS R01 AI146194NIAID NIH HHS R21 AI121932NIAID NIH HHS U19 AI162598NIAID NIH HHS U24 AI118668NIGMS NIH HHS R00 GM118907United States Department of Defense | Defense Threat Reduction Agency (DTRA) HDTRA12210032U.S. Department of Health & Human Services | National Institutes of Health (NIH) R00-GM118907U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-AI146194U.S. Department of Health & Human Services | National Institutes of Health (NIH) R21-AI121932U.S. Department of Health & Human Services | National Institutes of Health (NIH) RM1-HG006193U.S. Department of Health & Human Services | National Institutes of Health (NIH) U19-AI11276U.S. Department of Health & Human Services | National Institutes of Health (NIH) U19-AI62589U.S. Department of Health & Human Services | National Institutes of Health (NIH) U19-AI62598
6 · The paper itself

Abstract

Multidrug-resistant tuberculosis (MDR-TB), defined as resistance to the first-line drugs isoniazid and rifampin, is a growing source of global mortality and threatens global control of tuberculosis disease. The diarylquinoline bedaquiline has recently emerged as a highly efficacious drug against MDR-TB and kills Mycobacterium tuberculosis by inhibiting mycobacterial ATP synthase. However, the mechanisms underlying bedaquiline's efficacy against MDR-TB remain unknown. Here we investigate bedaquiline hyper-susceptibility in drug-resistant Mycobacterium tuberculosis using systems biology approaches. We discovered that MDR clinical isolates are commonly sensitized to bedaquiline. This hypersensitization is caused by several physiological changes induced by deficient catalase activity. These include enhanced accumulation of reactive oxygen species, increased susceptibility to DNA damage, induction of sensitizing transcriptional programs, and metabolic repression of several biosynthetic pathways. In this work we demonstrate how resistance-associated changes in bacterial physiology can mechanistically induce collateral antimicrobial drug sensitivity and reveal druggable vulnerabilities in antimicrobial resistant pathogens.

Indexed as

Bacterial ProteinsBacterial Proton-Translocating ATPasesCatalaseDiarylquinolinesMycobacterium tuberculosisTuberculosis, Multidrug-ResistantAntitubercular AgentsBiosynthetic PathwaysDNA DamageDrug Resistance, Multiple, BacterialHumansMicrobial Sensitivity TestsMitochondrial Proton-Translocating ATPasesReactive Oxygen SpeciesSystems BiologyAntitubercular AgentsBacterial ProteinsBacterial Proton-Translocating ATPasesbedaquilineCatalaseDiarylquinolineskatG protein, Mycobacterium tuberculosisMitochondrial Proton-Translocating ATPasesReactive Oxygen Species

Identifiers

PMID39537610
PMCPMC11561320

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.