Evidence map›Paper›PMID 39537607›Full record

ArticleNature communications2024

Whole genome CRISPRi screening identifies druggable vulnerabilities in an isoniazid resistant strain of Mycobacterium tuberculosis.

XinYue Wang, William J Jowsey, Chen-Yi Cheung, Caitlan J Smart, Hannah R Klaus, Noon Ej Seeto, Natalie Je Waller, Michael T Chrisp, Amanda L Peterson, Boatema Ofori-Anyinam and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Dual inhibition of respiratory complexes inMicrobiology spectrum · 2026
    Article
  2. iScience · 2026
    Article
  3. Article
  4. Article
  5. Metabolic perturbation reduces antibiotic tolerance inMicrobiology (Reading, England) · 2026
    Article
  6. Review
  7. Review
  8. Review
  9. Metabolic rewiring of isoniazid sensitivity inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Genetic determinants ofMicrobiology spectrum · 2025
    Article
  11. Review
  12. Article
  13. Verapamil and its metabolite norverapamil inhibit theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

XinYue WangDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.ORCID 0000-0001-6990-783X
William J JowseyDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.ORCID 0000-0002-7374-9675
Chen-Yi CheungDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.
Caitlan J SmartDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.
Hannah R KlausDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.ORCID 0000-0003-2512-8361
Noon Ej SeetoDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.
Natalie Je WallerDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.
Michael T ChrispDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.
Amanda L PetersonMetabolomics Australia, Bio21 Institute, The University of Melbourne, Melbourne, VIC, Australia.
Boatema Ofori-AnyinamCenter for Emerging and Re-emerging Pathogens, Public Health Research Institute, Rutgers New Jersey Medical School, Newark, NJ, USA.ORCID 0000-0002-8981-8188
Emily StrongSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia.
Brunda NijagalMetabolomics Australia, Bio21 Institute, The University of Melbourne, Melbourne, VIC, Australia.
Nicholas P WestSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia.ORCID 0000-0003-0955-9890
Jason H YangCenter for Emerging and Re-emerging Pathogens, Public Health Research Institute, Rutgers New Jersey Medical School, Newark, NJ, USA.ORCID 0000-0003-0921-4657
Peter C FineranDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.ORCID 0000-0002-4639-6704
Gregory M CookDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.ORCID 0000-0001-8349-1500
Simon A JacksonDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.ORCID 0000-0002-4512-3093
Matthew B McNeilDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand. matthew.mcneil@otago.ac.nz.ORCID 0000-0001-7747-7745

Funding

Supplement to grant: Development of Dendrimer and Combination MicrobicidesU19AI060598 · NIAID · STARPHARMA, LTD · PI PAULL, JEREMY · 2004 to 2009
$6.9M
Genetic, Metabolic and Regulatory Control of MIC and Relapse in M. tuberculosisR01AI146194 · NIAID · UNIVERSITY OF WASHINGTON · PI ALLAND, DAVID, SHERMAN, DAVID R · 2020 to 2024
$4.1M
Manatu Hauora | Health Research Council of New Zealand (HRC) 20/459Manatu Hauora | Health Research Council of New Zealand (HRC) 22/156Manatu Hauora | Health Research Council of New Zealand (HRC) 23/228NIAID NIH HHS R01 AI146194NIAID NIH HHS U19 AI060598
6 · The paper itself

Abstract

Drug-resistant strains of Mycobacterium tuberculosis are a major global health problem. Resistance to the front-line antibiotic isoniazid is often associated with mutations in the katG-encoded bifunctional catalase-peroxidase. We hypothesise that perturbed KatG activity would generate collateral vulnerabilities in isoniazid-resistant katG mutants, providing potential pathway targets to combat isoniazid resistance. Whole genome CRISPRi screens, transcriptomics, and metabolomics were used to generate a genome-wide map of cellular vulnerabilities in an isoniazid-resistant katG mutant strain of M. tuberculosis. Here, we show that metabolic and transcriptional remodelling compensates for the loss of KatG but in doing so generates vulnerabilities in respiration, ribosome biogenesis, and nucleotide and amino acid metabolism. Importantly, these vulnerabilities are more sensitive to inhibition in an isoniazid-resistant katG mutant and translated to clinical isolates. This work highlights how changes in the physiology of drug-resistant strains generates druggable vulnerabilities that can be exploited to improve clinical outcomes.

Indexed as

Antitubercular AgentsBacterial ProteinsCatalaseDrug Resistance, BacterialIsoniazidMycobacterium tuberculosisClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsGenome, BacterialHumansMicrobial Sensitivity TestsMutationAntitubercular AgentsBacterial ProteinsCatalaseIsoniazidkatG protein, Mycobacterium tuberculosis

Identifiers

PMID39537607
PMCPMC11560980

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.