Evidence map›Paper›PMID 39536468›Full record

ArticleInternational journal of laboratory hematology2025

APEX1 Polymorphisms Affect Acute Myeloid Leukemia Risk, and Its Expression Is Involved in Cell Proliferation and Differentiation.

Nanami Gotoh, Tsukasa Oda, Yuya Kitamura, Natsuki Shiraishi, Runa Aoyagi, Ayane Omori, Kota Yanagisawa, Minami Iida, Yua Itoi, Hikaru Negishi and 9 more

Abstract read
In one paragraph

Article in International journal of laboratory hematology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Nanami GotohDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.ORCID https://orcid.org/0000-0002-2381-319X
Tsukasa OdaLaboratory of Mucosal Ecosystem Design, Institute for Molecular and Cellular Regulation, Gunma University, Maebashi, Japan.ORCID https://orcid.org/0000-0002-8941-161X
Yuya KitamuraDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.
Natsuki ShiraishiDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.
Runa AoyagiDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.
Ayane OmoriDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.
Kota YanagisawaDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.
Minami IidaDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.
Yua ItoiDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.
Hikaru NegishiDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.
Ikuko MatsumuraDepartment of Hematology, Graduate School of Medicine, Gunma University, Maebashi, Japan.
Tetsuhiro KasamatsuDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.ORCID https://orcid.org/0000-0002-7943-9176
Eiji MiyauchiLaboratory of Mucosal Ecosystem Design, Institute for Molecular and Cellular Regulation, Gunma University, Maebashi, Japan.ORCID https://orcid.org/0000-0002-8202-684X
Nobuo SasakiLaboratory of Mucosal Ecosystem Design, Institute for Molecular and Cellular Regulation, Gunma University, Maebashi, Japan.ORCID https://orcid.org/0000-0002-8798-7244
Satoru TakadaLeukemia Research Centre, Saiseikai Maebashi Hospital, Maebashi, Japan.
Akihiko YokohamaDivision of Blood Transfusion Service, Gunma University Hospital, Maebashi, Japan.
Hiroshi HandaDepartment of Hematology, Graduate School of Medicine, Gunma University, Maebashi, Japan.ORCID https://orcid.org/0000-0003-3753-9862
Hirokazu MurakamiFaculty of Medical Technology and Clinical Engineering, Gunma University of Health and Welfare, Maebashi, Japan.
Takayuki SaitohDepartment of Laboratory Science, Graduate School of Health Sciences, Gunma University, Maebashi, Japan.ORCID https://orcid.org/0000-0001-5524-7455

Funding

KAKENHI
6 · The paper itself

Abstract

introductionThe link between DNA repair gene polymorphisms and cancer susceptibility has gained significant attention. Thus, we investigated the impact of base excision repair (BER) gene polymorphisms on acute myeloid leukemia (AML) risk and pathogenesis.

methodsIn total, 106 patients with AML and 191 healthy controls were included in the study, wherein polymorphisms in four BER genes (APEX1, MUTYH, OGG1, and XRCC1) were examined.

resultsNotably, the APEX1-656 T>G polymorphism exhibited a significant association with AML risk in the recessive (TT vs. TG + GG) (p = 0.046) and co-dominant models (TT vs. GG) (p = 0.02). Assessing APEX1 expression levels, APEX1 expression was elevated in the bone marrow of patients with AML compared with that in controls (p = 0.02). Subsequently, we compared the percentages of CD34+ cells between the APEX1 high or low expression groups, revealing a significant difference (high vs. low = 29.9% vs. 11.5%, p = 0.01). Additionally, we observed reduced APEX1 expression in HL60 cells differentiated with all-trans retinoic acid (p < 0.001). We hypothesized that APEX1 expression could correlate with stemness and analyzed its expression in stem and differentiated cells.

conclusionsIn the GSE48558 dataset, AML cells and normal CD34+ cells expressed APEX1 at higher levels than did granulocytes (p < 0.01). Functional experiments revealed that APEX1 knockdown led to a reduction in AML cell proliferation. These findings indicated that APEX1 polymorphisms were a potential risk factor for AML and highlighted the important role of APEX1 in regulating AML cell differentiation and proliferation.

Indexed as

Cell DifferentiationCell ProliferationDNA-(Apurinic or Apyrimidinic Site) LyaseGene Expression Regulation, LeukemicGenetic Predisposition to DiseaseLeukemia, Myeloid, AcutePolymorphism, Single NucleotideAdultAgedCase-Control StudiesFemaleHumansMaleMiddle AgedAPEX1 protein, humanDNA-(Apurinic or Apyrimidinic Site) Lyaseacute myeloid leukemiabase excision repairdifferentiationexpressionpolymorphism

Identifiers

PMID39536468
PMCPMC11885693

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.