Evidence map›Paper›PMID 39536108›Full record

ArticleScience advances2024

Three modes of viral adaption by the heart.

Cameron D Griffiths, Millie Shah, William Shao, Cheryl A Borgman, Kevin A Janes

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Systems Virology at Scale.Current opinion in systems biology · 2025
    Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Cameron D GriffithsDepartment of Biomedical Engineering, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0002-1280-3615
Millie ShahDepartment of Biomedical Engineering, University of Virginia, Charlottesville, VA 22908, USA.
William ShaoDepartment of Biomedical Engineering, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0009-0006-6134-372X
Cheryl A BorgmanDepartment of Biomedical Engineering, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0009-0009-2967-3501
Kevin A JanesDepartment of Biomedical Engineering, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0002-8028-6138

Funding

Biotechnology Training ProgramT32GM136615 · NIGMS · UNIVERSITY OF VIRGINIA · PI Silvia Salinas Blemker, Kimberly A. Kelly · 2020 to 2026
$3.4M
In silico modeling of subcellular infection by diverse families of RNA virusR01AI186222 · NIAID · UNIVERSITY OF VIRGINIA · PI Kevin A Janes · 2024 to 2026
$1.6M
Interdisciplinary Training in Systems & Biomolecular Data ScienceT32GM145443 · NIGMS · UNIVERSITY OF VIRGINIA · PI Kevin A Janes, Jason Papin · 2022 to 2026
$1.5M
Systems-biology Approaches for Decoding Persistent Coxsackievirus B3 InfectionR21AI105970 · NIAID · UNIVERSITY OF VIRGINIA · PI JANES, KEVIN A · 2013 to 2014
$426k
NIAID NIH HHS R01 AI186222NIAID NIH HHS R21 AI105970NIGMS NIH HHS T32 GM136615NIGMS NIH HHS T32 GM145443
6 · The paper itself

Abstract

Viruses elicit long-term adaptive responses in the tissues they infect. Understanding viral adaptions in humans is difficult in organs such as the heart, where primary infected material is not routinely collected. In search of asymptomatic infections with accompanying host adaptions, we mined for cardio-pathogenic viruses in the unaligned reads of nearly 1000 human hearts profiled by RNA sequencing. Among virus-positive cases (~20%), we identified three robust adaptions in the host transcriptome related to inflammatory nuclear factor κB (NF-κB) signaling and posttranscriptional regulation by the p38-MK2 pathway. The adaptions are not determined by the infecting virus, and they recur in infections of human or animal hearts and cultured cardiomyocytes. Adaptions switch states when NF-κB or p38-MK2 is perturbed in cells engineered for chronic infection by the cardio-pathogenic virus, coxsackievirus B3. Stratifying viral responses into reversible adaptions adds a targetable systems-level simplification for infections of the heart and perhaps other organs.

Indexed as

Myocytes, CardiacNF-kappa BAdaptation, PhysiologicalAnimalsCoxsackievirus InfectionsEnterovirus B, HumanHeartHost-Pathogen InteractionsHumansMyocardiumSignal TransductionTranscriptomeNF-kappa B

Identifiers

PMID39536108
PMCPMC11559625

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.