Evidence map›Paper›PMID 39535994›Full record

ArticlePLOS global public health2024

Genomic sequencing and neutralizing serological profiles during acute dengue infection: A 2017 cohort study in Nepal.

Sabita Prajapati, Annie Elong Ngono, Melanie Mc Cauley, Julia Timis, Srijan Shrestha, Anup Bastola, Shrawan Kumar Mandal, Sanjay Ray Yadav, Rajindra Napit, Meng Ling Moi and 4 more

Abstract read
In one paragraph

Article in PLOS global public health, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Sabita PrajapatiInfectious and Viral Disease Research Laboratory, Central Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.ORCID https://orcid.org/0000-0003-2140-8171
Annie Elong NgonoCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, California, United States of America.
Melanie Mc CauleyCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, California, United States of America.
Julia TimisCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, California, United States of America.
Srijan ShresthaInfectious and Viral Disease Research Laboratory, Central Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Anup BastolaSukraraj Tropical and Infectious Disease Hospital, Teku, Kathmandu, Nepal.
Shrawan Kumar MandalSukraraj Tropical and Infectious Disease Hospital, Teku, Kathmandu, Nepal.ORCID https://orcid.org/0000-0001-9475-2040
Sanjay Ray YadavDepartment of Haematology and Biochemistry, Chitwan Medical College and Teaching Hospital, Chitwan, Nepal.
Rajindra NapitInfectious and Viral Disease Research Laboratory, Central Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.
Meng Ling MoiSchool of International Health, Graduate School of Medicine, University of Tokyo, Tokyo, Japan.
Montarop YamabhaiMolecular Biotechnology Laboratory, School of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, Thailand.ORCID https://orcid.org/0000-0003-2674-2419
October M SessionsSaw Swee Hock School of Public Health, National University of Singapore, Singapore.
Sujan ShrestaCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, California, United States of America.ORCID https://orcid.org/0000-0003-2906-8474
Krishna Das ManandharInfectious and Viral Disease Research Laboratory, Central Department of Biotechnology, Tribhuvan University, Kirtipur, Kathmandu, Nepal.ORCID https://orcid.org/0000-0002-6798-4935

Funding

Emerging infections: surveillance, epidemiology and pathogenesisU01AI151810 · NIAID · WASHINGTON UNIVERSITY · PI Adrianus CM Boon, DAVID WANG · 2020 to 2026
$10.0M
Development of a Replicon RNA-based Vaccine against Dengue and ZikaR01AI163188 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SHRESTA, SUJAN · 2021 to 2025
$3.6M
Maternal Antibody-Mediated Enhancement of Dengue PathogenesisR01AI153500 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SHRESTA, SUJAN · 2021 to 2025
$3.1M
NIAID NIH HHS R01 AI153500NIAID NIH HHS R01 AI163188NIAID NIH HHS U01 AI151810
6 · The paper itself

Abstract

Dengue virus (DENV) is a mosquito-borne flavivirus that poses a threat to nearly 50% of the global population. DENV has been endemic in Nepal since 2006; however, little is known about how DENV is evolving or the prevalence of anti-DENV immunity within the Nepalese population. To begin to address these gaps, we performed a serologic and genetic study of 49 patients from across Nepal who presented at central hospitals during the 2017 dengue season with suspected DENV infection. Of the 49 subjects assessed, 21 (43%) were positive for DENV NS1 antigen; of these; 5 were also anti-DENV IgM+ IgG+; 7 were DENV IgM+ IgG-, 2 were IgM- IgG+, and 7 were IgM-IgG- by specific ELISAs. Seven of the 21 NS1 positive sera were RNA positive by RT-PCR (six DENV2, one DENV3), suggesting that DENV2 was the dominant serotype in our cohort. Whole-genome sequencing of two DENV2 isolates showed similarity with strains circulating in Singapore in 2016, and the envelope genes were also similar to strains circulating in India in 2017. DENV-neutralizing antibodies (nAbs) were present in 31 of 47 sera tested (66%); among these, 20, 24, 26, and 12 sera contained nAbs against DENV1, 2, 3, and 4 serotypes, respectively. Additionally, 27 (58%) samples had nAbs against multiple serotypes (2 or more). Serology analysis suggested that 12 (26%) and 19 (40%) of the 47 subjects were experiencing primary and secondary DENV infections, respectively. Collectively, our results provide evidence for current and/or past exposure to multiple DENV serotypes in our cohort. These data suggest that expanded local surveillance of circulating DENV genotypes and population immunity will be important to effectively manage and mitigate future dengue outbreaks in Nepal.

Identifiers

PMID39535994
PMCPMC11560038

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.