Evidence map›Paper›PMID 39533058›Full record

ArticleThe EMBO journal2024

Calcium signaling from damaged lysosomes induces cytoprotective stress granules.

Jacob Duran, Jay E Salinas, Rui Ping Wheaton, Suttinee Poolsup, Lee Allers, Monica Rosas-Lemus, Li Chen, Qiuying Cheng, Jing Pu, Michelle Salemi and 7 more

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Lysosomal homeostasis at the crossroads of neurodegeneration.The Journal of clinical investigation · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Lysosomal Repair in Health and Disease.Journal of cellular physiology · 2025
    Review
  16. Review
  17. Review
  18. Lysosomes' fallback strategies: more than just survival or death.Frontiers in cell and developmental biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Jacob Duran *Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.
Jay E Salinas *Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.
Rui Ping Wheaton *Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.ORCID http://orcid.org/0009-0006-0242-0406
Suttinee PoolsupCenter for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.ORCID http://orcid.org/0000-0003-0457-7045
Lee AllersAutophagy, Inflammation and Metabolism Center of Biochemical Research Excellence, Albuquerque, NM, 87106, USA.
Monica Rosas-LemusAutophagy, Inflammation and Metabolism Center of Biochemical Research Excellence, Albuquerque, NM, 87106, USA.ORCID http://orcid.org/0000-0002-6243-0271
Li ChenAutophagy, Inflammation and Metabolism Center of Biochemical Research Excellence, Albuquerque, NM, 87106, USA.
Qiuying ChengCenter for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.
Jing PuDepartment of Molecular Genetics and Microbiology, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.ORCID http://orcid.org/0000-0002-1851-8583
Michelle SalemiProteomics Core Facility, University of California Davis Genome Center, University of California, Davis, CA, 95616, USA.
Brett PhinneyProteomics Core Facility, University of California Davis Genome Center, University of California, Davis, CA, 95616, USA.
Pavel IvanovDepartment of Medicine, Brigham and Women's Hospital and Harvard Medical School; HMS Initiative for RNA Medicine, Boston, MA, 02115, USA.
Alf Håkon LystadCentre for Cancer Cell Reprogramming, Faculty of Medicine, University of Oslo; Department of Molecular Cell Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.
Kiran BhaskarDepartment of Molecular Genetics and Microbiology, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.ORCID http://orcid.org/0000-0001-6064-8106
Jaya RajaiyaDepartment of Molecular Genetics and Microbiology, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.
Douglas J PerkinsCenter for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA.
Jingyue JiaCenter for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM, 87106, USA. JJia@salud.unm.edu.ORCID http://orcid.org/0000-0002-1522-9612

Funding

Unfolded Protein Response and Autophagy in T Helper Cell Effector FunctionP20GM121176 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Samuel Joseph Endicott · 2017 to 2026
$24.9M
Immunopathogenesis of Adenovirus KeratitisR01EY013124 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI James Chodosh, Jaya Rajaiya · 2001 to 2026
$10.8M
Novel Mechanisms in Adenoviral Ocular PathogenesisR01EY021558 · NEI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI James Chodosh, Jaya Rajaiya · 2011 to 2026
$7.1M
Harnessing the Malarial Immunity Omics Landscape in Vaccinated and Unvaccinated Children for Improved Therapeutic StrategiesR01AI130473 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Samuel Bonuke Anyona, Douglas Jay Perkins · 2018 to 2026
$5.6M
The Role of Inflammasome Signaling in TauopathiesRF1NS083704 · NINDS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI BHASKAR, KIRAN · 2020 to 2020
$2.7M
Lysosome‐Lipid Droplet Interactions in Fatty Acid MetabolismR35GM147419 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Jing Pu · 2022 to 2026
$1.9M
Cellular Mechanisms of Lysosomal Damage ResponseR35GM154651 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Jingyue jia cassano · 2024 to 2026
$1.1M
Phinney - Orbitrap Fusion ETDS10OD021801 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI PHINNEY, BRETT S · 2016 to 2016
$600k
QE-HF-X Mass SpectrometerS10OD026918 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI PHINNEY, BRETT S · 2020 to 2020
$600k
HHS | NIH | National Institute of General Medical Sciences (NIGMS) P20GM121176; R35GM154651NEI NIH HHS R01 EY013124NEI NIH HHS R01 EY021558NIAID NIH HHS R01 AI130473NIGMS NIH HHS P20 GM121176NIGMS NIH HHS R35 GM147419NIGMS NIH HHS R35 GM154651NIGMS R35 R35GM147419NIH AIM COBRE P20GM121176NIH HHS S10 OD021801NIH HHS S10 OD026918NIH R01 AI130473NIH RF1 R01EY021558 and R01EY013124NIH RF1 RF1NS083704NIH S10 S10OD026918-01A1NINDS NIH HHS RF1 NS083704Young Research Talents Grant from the Research Council of Norway 325305
6 · The paper itself

Abstract

Lysosomal damage induces stress granule (SG) formation. However, the importance of SGs in determining cell fate and the precise mechanisms that mediate SG formation in response to lysosomal damage remain unclear. Here, we describe a novel calcium-dependent pathway controlling SG formation, which promotes cell survival during lysosomal damage. Mechanistically, the calcium-activated protein ALIX transduces lysosomal damage signals to SG formation by controlling eIF2α phosphorylation after sensing calcium leakage. ALIX enhances eIF2α phosphorylation by promoting the association between PKR and its activator PACT, with galectin-3 inhibiting this interaction; these regulatory events occur on damaged lysosomes. We further find that SG formation plays a crucial role in promoting cell survival upon lysosomal damage caused by factors such as SARS-CoV-2

Indexed as

Calcium SignalingLysosomesStress GranulesAnimalsCalciumCalcium-Binding ProteinsCell SurvivaleIF-2 KinaseEukaryotic Initiation Factor-2HEK293 CellsHeLa CellsHumansPhosphorylationCalciumCalcium-Binding ProteinsEIF2AK2 protein, humaneIF-2 KinaseEukaryotic Initiation Factor-2ALG2-ALIXCalcium-dependent PathwayLysosomal DamagePACT-PKR-eIF2αStress Granules

Identifiers

PMID39533058
PMCPMC11649789

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.