Evidence map›Paper›PMID 39532536›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2025

Cell-Type-Specific Splicing of Transcription Regulators and

Xiangbin Ruan, Kaining Hu, Yalan Yang, Runwei Yang, Elizabeth Tseng, Bowei Kang, Aileen Kauffman, Rong Zhong, Xiaochang Zhang

Abstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Xiangbin RuanDepartment of Human Genetics, The University of Chicago, Chicago, Illinois 60637.
Kaining HuDepartment of Human Genetics, The University of Chicago, Chicago, Illinois 60637.
Yalan YangDepartment of Human Genetics, The University of Chicago, Chicago, Illinois 60637.
Runwei YangDepartment of Human Genetics, The University of Chicago, Chicago, Illinois 60637.
Elizabeth TsengPacific Biosciences, Menlo Park, California 94025.
Bowei KangDepartment of Human Genetics, The University of Chicago, Chicago, Illinois 60637.
Aileen KauffmanDepartment of Human Genetics, The University of Chicago, Chicago, Illinois 60637.
Rong ZhongDepartment of Human Genetics, The University of Chicago, Chicago, Illinois 60637.
Xiaochang ZhangDepartment of Human Genetics, The University of Chicago, Chicago, Illinois 60637 xczhang@uchicago.edu.ORCID 0000-0001-5768-7470

Funding

Single cell detection of dynamic protein-RNA interactionDP2GM137423 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHANG, XIAOCHANG · 2019 to 2019
$2.4M
Rescuing SYNGAP1 haploinsufficiency by redirecting alternative splicingR01MH130594 · NIMH · UNIVERSITY OF CHICAGO · PI Xiaochang Zhang · 2023 to 2026
$2.4M
Mechanisms of Cell-type-specific pre-mRNA SplicingR35GM152177 · NIGMS · UNIVERSITY OF CHICAGO · PI Xiaochang Zhang · 2024 to 2026
$1.4M
NIGMS NIH HHS DP2 GM137423NIGMS NIH HHS R35 GM152177NIMH NIH HHS R01 MH130594
6 · The paper itself

Abstract

How master splicing regulators cross talk with each other and to what extent transcription regulators are differentially spliced remain unclear in the developing brain. Here, cell-type-specific RNA-Seq analyses of the developing neocortex uncover variable expression of the Rbfox1/2/3 genes and enriched alternative splicing events in transcription regulators, altering protein isoforms or inducing nonsense-mediated mRNA decay. Transient expression of Rbfox proteins in radial glial progenitors induces neuronal splicing events preferentially in transcription regulators such as

Indexed as

Alternative SplicingHeterogeneous-Nuclear RibonucleoproteinsNeocortexPolypyrimidine Tract-Binding ProteinRNA Splicing FactorsTranscription FactorsAnimalsFemaleGene Expression Regulation, DevelopmentalMaleMiceNeurogenesisNeuronsHeterogeneous-Nuclear RibonucleoproteinsPolypyrimidine Tract-Binding ProteinPtbp1 protein, mouseRbfox1 protein, mouseRbfox2 protein, mouseRNA Splicing FactorsTranscription Factorsfull-length mRNA isoformslong-read RNA-Seqmultiplexed CRISPR editingNeuNneuronal migrationunproductive splicing

Identifiers

PMID39532536
PMCPMC11823335

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.