Evidence map›Paper›PMID 39530088›Full record

ArticleFrontiers in immunology2024

BCR, not TCR, repertoire diversity is associated with favorable COVID-19 prognosis.

Faith Jessica Paran, Rieko Oyama, Abdullah Khasawneh, Tomohiko Ai, Hendra Saputra Ismanto, Aalaa Alrahman Sherif, Dianita Susilo Saputri, Chikako Ono, Mizue Saita, Satomi Takei and 8 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Faith Jessica Paran *Diagnostics and Therapeutics of Intractable Diseases, Intractable Disease Research Center, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Rieko Oyama *Department of Research Support Utilizing Bioresource Bank, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Abdullah KhasawnehLeading Center for the Development and Research of Cancer Medicine, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Tomohiko AiDepartment of Clinical Laboratory Medicine, Juntendo University, Urayasu Hospital, Chiba, Japan.
Hendra Saputra IsmantoDepartment of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Aalaa Alrahman SherifDepartment of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Dianita Susilo SaputriDepartment of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Chikako OnoLaboratory of Virus Control, Center for Infectious Disease Education and Research, Osaka University, Osaka, Japan.
Mizue SaitaDepartment of General Medicine, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Satomi TakeiDepartment of Clinical Laboratory Medicine, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Yuki HoriuchiDepartment of Clinical Laboratory Medicine, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Ken YagiLaboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center, RIKEN, Yokohama, Japan.
Yoshiharu MatsuuraLaboratory of Virus Control, Center for Infectious Disease Education and Research, Osaka University, Osaka, Japan.
Yasushi OkazakiDiagnostics and Therapeutics of Intractable Diseases, Intractable Disease Research Center, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Kazuhisa TakahashiDepartment of Research Support Utilizing Bioresource Bank, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Daron M StandleyDepartment of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Yoko TabeDepartment of Research Support Utilizing Bioresource Bank, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Toshio NaitoDepartment of Research Support Utilizing Bioresource Bank, Graduate School of Medicine, Juntendo University, Tokyo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: The SARS-CoV-2 pandemic has had a widespread and severe impact on society, yet there have also been instances of remarkable recovery, even in critically ill patients. Materials and methods: In this study, we used single-cell RNA sequencing to analyze the immune responses in recovered and deceased COVID-19 patients during moderate and critical stages. Results: Expanded T cell receptor (TCR) clones were predominantly SARS-CoV-2-specific, but represented only a small fraction of the total repertoire in all patients. In contrast, while deceased patients exhibited monoclonal B cell receptor (BCR) expansions without COVID-19 specificity, survivors demonstrated diverse and specific BCR clones. These findings suggest that neither TCR diversity nor BCR monoclonal expansions are sufficient for viral clearance and subsequent recovery. Differential gene expression analysis revealed that protein biosynthetic processes were enriched in survivors, but that potentially damaging mitochondrial ATP metabolism was activated in the deceased. Conclusion: This study underscores that BCR repertoire diversity, but not TCR diversity, correlates with favorable outcomes in COVID-19.

Indexed as

COVID-19Receptors, Antigen, B-CellReceptors, Antigen, T-CellSARS-CoV-2AdultAgedB-LymphocytesFemaleHumansMaleMiddle AgedPrognosisSingle-Cell AnalysisReceptors, Antigen, B-CellReceptors, Antigen, T-CellCOVID - 19gene expressionimmune repertoire analysisimmunology & infectious diseasessingle cell RNA and transcriptome sequencing

Identifiers

PMID39530088
PMCPMC11550956

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.