Evidence map›Paper›PMID 39529934›Full record

ArticleFrontiers in plant science2024

Virulence perspective genomic research unlocks the secrets of

T S S K Patro, K B Palanna, B Jeevan, Pallavi Tatineni, T Tharana Poonacha, Farooq Khan, G V Ramesh, Anusha M Nayak, Boda Praveen, M Divya and 6 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in plant science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Unraveling the pathogenomics ofFrontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

T S S K PatroAgricultural Research Station, Acharya N. G. Ranga (ANGR) Agricultural University, Vizianagaram, Andhra Pradesh, India.
K B PalannaICAR-All India Coordinated Research Project (ICAR-AICRP) on Small Millets, Project Coordinating (PC) Unit, University of Agricultural Sciences, Bengaluru, Karnataka, India.
B JeevanCrop Protection Division, ICAR-National Rice Research Institute, Cuttack, Odisha, India.
Pallavi TatineniAgricultural Research Station, Acharya N. G. Ranga (ANGR) Agricultural University, Vizianagaram, Andhra Pradesh, India.
T Tharana PoonachaDepartment of Plant Pathology, University of Agricultural Sciences, Bengaluru, Karnataka, India.
Farooq KhanDepartment of Plant Pathology, University of Agricultural Sciences, Bengaluru, Karnataka, India.
G V RameshDepartment of Plant Pathology, Punjab Agricultural University, Ludhiana, Punjab, India.
Anusha M NayakDepartment of Plant Pathology, University of Agricultural Sciences, Bengaluru, Karnataka, India.
Boda PraveenAgricultural Research Station, Acharya N. G. Ranga (ANGR) Agricultural University, Vizianagaram, Andhra Pradesh, India.
M DivyaAgricultural Research Station, Acharya N. G. Ranga (ANGR) Agricultural University, Vizianagaram, Andhra Pradesh, India.
N AnuradhaAgricultural Research Station, Acharya N. G. Ranga (ANGR) Agricultural University, Vizianagaram, Andhra Pradesh, India.
Y Sandhya RaniAgricultural Research Station, Acharya N. G. Ranga (ANGR) Agricultural University, Vizianagaram, Andhra Pradesh, India.
T E NagarajaICAR-All India Coordinated Research Project (ICAR-AICRP) on Small Millets, Project Coordinating (PC) Unit, University of Agricultural Sciences, Bengaluru, Karnataka, India.
R MadhusudhanaICAR- Indian Institute of Millets Research, Hyderabad, Telangana, India.
C Tara SatyavathiICAR- Indian Institute of Millets Research, Hyderabad, Telangana, India.
S Koti PrasannaDepartment of Plant Biotechnology, University of Agricultural Sciences, Bengaluru, Karnataka, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Banded sheath blight (Bsb) disease, caused by Methods: A virulence profiling-based approach was employed and six Results: The RAP2 genome is 43.63 megabases in size and comprises 10.95% repetitive DNA, within which 46% are retroelements, 8% are DNA transposons, and 46% are unidentified DNA. The Gene Ontology (GO) annotation of RAP2 proteins revealed that "phosphorylation", "membrane", and "ATP binding" have the highest gene enrichment in the "biological process", "cellular component" and "molecular function" domains, respectively. The genome comprises a majority of secretory proteins in the pectin lyase fold/virulence factor superfamily, which break down plant cell wall polymers to extract saccharides. The RAP2 genome is comparable to Discussion: Interestingly, a 28-bp deletion in the RAP2 strain's cutinase domain was discovered in the cutinase protein, which might be important in the infection process, perhaps rendering the enzyme inactive or allowing the pathogen to infect barnyard millet while avoiding host defense. This study sheds light on the genetic makeup of

Indexed as

banded sheath blightcutinase proteingenomicsmitochondrial genomeRhizoctonia solanisecretome

Identifiers

PMID39529934
PMCPMC11551851

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.