Evidence map›Paper›PMID 39529640›Full record

ArticleGastro hep advances2024

Noninvasive Stool RNA Test Approximates Disease Activity in Patients With Crohn's Disease.

Ryan B Ghannam, Erica K Barnell, Ali Osman, Richard Roberts, Patrick Donohue, Spencer King, Jack Land, Clayton Grass, Matthew A Ciorba, Parakkal Deepak

Abstract read
In one paragraph

Article in Gastro hep advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ryan B GhannamDepartment of Research and Development, Geneoscopy, Saint Louis, Missouri.
Erica K BarnellDepartment of Research and Development, Geneoscopy, Saint Louis, Missouri.
Ali OsmanDivision of Gastroenterology, Inflammatory Bowel Diseases Center, Washington University School of Medicine, St. Louis, Missouri.
Richard RobertsDepartment of Research and Development, Geneoscopy, Saint Louis, Missouri.
Patrick DonohueDepartment of Medicine, Washington University School of Medicine, St. Louis, Missouri.
Spencer KingDepartment of Research and Development, Geneoscopy, Saint Louis, Missouri.
Jack LandDepartment of Research and Development, Geneoscopy, Saint Louis, Missouri.
Clayton GrassDepartment of Research and Development, Geneoscopy, Saint Louis, Missouri.
Matthew A CiorbaDepartment of Medicine, Washington University School of Medicine, St. Louis, Missouri.
Parakkal DeepakDepartment of Medicine, Washington University School of Medicine, St. Louis, Missouri.

Funding

Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
NIDDK NIH HHS P30 DK052574
6 · The paper itself

Abstract

Background and Aims: Management of Crohn's disease (CD) requires frequent monitoring for disease activity and response to therapy. In this study, we examined the clinical utility of a novel stool-derived eukaryotic RNA (seRNA)-based diagnostic in patients with CD. Methods: Stool samples were collected from 68 individuals for up to 3 time points prior to, and after initiation of an advanced therapy. Stool samples underwent RNA extraction and sequencing using a custom capture panel (n = 1507 transcripts). seRNA signatures were compared to Crohn's Disease Activity Index scores and endoscopies, when available. Random forest models classified disease severity when compared to Crohn's Disease Activity Index scores. seRNA signatures were also used to assess expression of the therapy target and cell type abundance at various time points. Results: Across all 102 samples collected from 68 individuals, the classifier successfully parsed individuals with active disease (n = 37) relative to those in remission (n = 65) with 87% sensitivity and 77% specificity, respectively. A second classifier, which was employed on subjects with active disease (n = 37), successfully parsed individuals with mild disease (n = 15) from those with moderate disease (n = 22) with 93% and 86% sensitivity, respectively. For the 16 subjects with longitudinal data, seRNA expression of the therapeutic target (eg, ITGA4/ITGB7 for vedolizumab or IL12/IL23 for ustekinumab) as well as lymphocyte burden was correlated with response. Conclusion: A novel seRNA and informatic-based method reliably discriminates active disease from remission and stratifies mild from moderate CD activity. This demonstrates preliminary feasibility to predict therapeutic response and assess disease activity for patients with CD.

Indexed as

Crohn’s DiseaseDisease Activity and Therapeutic ResponseNoninvasive DiagnosticsStool Eukaryotic RNA

Identifiers

PMID39529640
PMCPMC11550734

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.