Evidence map›Paper›PMID 39528960›Full record

ArticleBMC genomic data2024

Comprehensive analysis of the genetic variation dataset among wild soybean (Glycine soja) in Shandong Province, China.

Lei-Lei Li, Ru-Mei Tian, Yan-Yan Pu, Yun-Zhe Cong, Xue Chen, Kai-Hua Jia, Na-Na Li

Abstract read
In one paragraph

Article in BMC genomic data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lei-Lei Li *National Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China.
Ru-Mei Tian *National Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China.
Yan-Yan PuNational Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China.
Yun-Zhe CongNational Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China.
Xue ChenWeifang Academy of Agricultural Sciences, Weifang, 261017, China.
Kai-Hua JiaNational Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China. kaihuajia_saas@163.com.
Na-Na LiNational Saline-Alkali Tolerant Crop Germplasm Resources Nursery (Dongying); Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation; Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan, 250100, China. qyz1127@163.com.

Funding

Key R&D Program of Shandong Province 2023LZGC001
6 · The paper itself

Abstract

objectivesWild soybean (Glycine soja), the ancestor of domesticated soybean, retains a higher level of genetic diversity and adaptability to harsh environments, making it highly valuable for breeding. Here, we re-sequenced 69 wild soybean individuals collected by the Shandong Academy of Agricultural Sciences and identified 1,613,162 high-quality SNPs which not only enriches our understanding of the genetic structure of wild soybean, but also provides valuable resources for further genomic research and genetic improvement of soybean. DATA DESCRIPTION: In this study, we collected 69 wild soybean accessions from Shandong Province, China, and performed re-sequencing on the DNBSEQ platform, followed by SNPs identification. We then integrated ADMIXTURE, neighbor-joining tree, and principal component analysis to illustrate population characteristics. The results showed that these wild soybean accessions could be divided into three distinct subpopulations, exhibiting significant genetic differences.

Indexed as

Glycine maxPolymorphism, Single NucleotideChinaGenetic VariationGenome, PlantPrincipal Component AnalysisPopulation geneticsRe-sequencingStructureWild soybean

Identifiers

PMID39528960
PMCPMC11552345

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.