Evidence map›Paper›PMID 39528795›Full record

ArticleNature structural & molecular biology2025

Structural basis of the mechanism and inhibition of a human ceramide synthase.

Tomas C Pascoa, Ashley C W Pike, Christofer S Tautermann, Gamma Chi, Michael Traub, Andrew Quigley, Rod Chalk, Saša Štefanić, Sven Thamm, Alexander Pautsch and 3 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Tomas C PascoaCentre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK. tomas.pascoa@cmd.ox.ac.uk.ORCID http://orcid.org/0000-0003-3375-4207
Ashley C W PikeCentre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-9661-2607
Christofer S TautermannBoehringer Ingelheim Pharma, GmbH & Co. KG, Biberach, Germany.ORCID http://orcid.org/0000-0002-6935-6940
Gamma ChiCentre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-9910-0965
Michael TraubBoehringer Ingelheim Pharma, GmbH & Co. KG, Biberach, Germany.
Andrew QuigleyCentre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-5022-9845
Rod ChalkCentre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Saša ŠtefanićInstitute of Parasitology, Vetsuisse and Medical Faculty, University of Zürich, Zürich, Switzerland.ORCID http://orcid.org/0000-0001-7367-1831
Sven ThammBoehringer Ingelheim Pharma, GmbH & Co. KG, Biberach, Germany.
Alexander PautschBoehringer Ingelheim Pharma, GmbH & Co. KG, Biberach, Germany.
Elisabeth P CarpenterCentre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK. lizcarpen1@gmail.com.ORCID http://orcid.org/0000-0001-9138-2937
Gisela SchnappBoehringer Ingelheim Pharma, GmbH & Co. KG, Biberach, Germany. gisela.schnapp@boehringer-ingelheim.com.ORCID http://orcid.org/0000-0002-1529-0130
David B SauerCentre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK. david.sauer@cmd.ox.ac.uk.ORCID http://orcid.org/0000-0001-9291-4640

Funding

Wellcome Trust
6 · The paper itself

Abstract

Ceramides are bioactive sphingolipids crucial for regulating cellular metabolism. Ceramides and dihydroceramides are synthesized by six ceramide synthase (CerS) enzymes, each with specificity for different acyl-CoA substrates. Ceramide with a 16-carbon acyl chain (C16 ceramide) has been implicated in obesity, insulin resistance and liver disease and the C16 ceramide-synthesizing CerS6 is regarded as an attractive drug target for obesity-associated disease. Despite their importance, the molecular mechanism underlying ceramide synthesis by CerS enzymes remains poorly understood. Here we report cryo-electron microscopy structures of human CerS6, capturing covalent intermediate and product-bound states. These structures, along with biochemical characterization, reveal that CerS catalysis proceeds through a ping-pong reaction mechanism involving a covalent acyl-enzyme intermediate. Notably, the product-bound structure was obtained upon reaction with the mycotoxin fumonisin B1, yielding insights into its inhibition of CerS. These results provide a framework for understanding CerS function, selectivity and inhibition and open routes for future drug discovery.

Indexed as

Membrane ProteinsOxidoreductasesSphingosine N-AcyltransferaseCeramidesCryoelectron MicroscopyEnzyme InhibitorsFumonisinsHumansModels, MolecularCeramidesCERS6 protein, humandihydroceramide desaturaseEnzyme Inhibitorsfumonisin B1FumonisinsMembrane ProteinsOxidoreductasesSphingosine N-Acyltransferase

Identifiers

PMID39528795
PMCPMC11919693

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.