Evidence map›Paper›PMID 39528709›Full record

ArticleCommunications biology2024

N-terminal cleavage of cyclophilin D boosts its ability to bind F-ATP synthase.

Gabriele Coluccino, Alessandro Negro, Antonio Filippi, Camilla Bean, Valentina Pia Muraca, Clarissa Gissi, Diana Canetti, Maria Chiara Mimmi, Elisa Zamprogno, Francesco Ciscato and 9 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Gabriele ColuccinoDepartment of Medicine, University of Udine, 33100, Udine, Italy.ORCID 0009-0007-9173-7807
Alessandro NegroDepartment of Biomedical Sciences, University of Padova, 35131, Padova, Italy.
Antonio FilippiDepartment of Medicine, University of Udine, 33100, Udine, Italy.
Camilla BeanDepartment of Medicine, University of Udine, 33100, Udine, Italy.
Valentina Pia MuracaDepartment of Medicine, University of Udine, 33100, Udine, Italy.
Clarissa GissiDepartment of Medicine, University of Udine, 33100, Udine, Italy.
Diana CanettiCentre for Amyloidosis, Division of Medicine, University College London, London, NW32PF, UK.
Maria Chiara MimmiCentre for Inherited Cardiovascular Diseases, IRCCS San Matteo Hospital Foundation, 27100, Pavia, Italy.
Elisa ZamprognoDepartment of Medicine, University of Udine, 33100, Udine, Italy.
Francesco CiscatoDepartment of Biomedical Sciences, University of Padova, 35131, Padova, Italy.
Laura AcquasalienteDepartment of Pharmaceutical & Pharmacological Sciences, University of Padova, 35131, Padova, Italy.ORCID 0000-0001-6495-0871
Vincenzo De FilippisDepartment of Pharmaceutical & Pharmacological Sciences, University of Padova, 35131, Padova, Italy.ORCID 0000-0001-9775-8894
Marina ComelliDepartment of Medicine, University of Udine, 33100, Udine, Italy.
Michela CarraroDepartment of Biomedical Sciences, University of Padova, 35131, Padova, Italy.
Andrea RasolaDepartment of Biomedical Sciences, University of Padova, 35131, Padova, Italy.ORCID 0000-0003-4522-3008
Christoph GerleLife Science Research Infrastructure Group, RIKEN SPring-8 Center, Kouto, Hyogo, Japan.ORCID 0000-0002-7265-2804
Paolo BernardiDepartment of Biomedical Sciences, University of Padova, 35131, Padova, Italy.ORCID 0000-0001-9187-3736
Alessandra CorazzaDepartment of Medicine, University of Udine, 33100, Udine, Italy. alessandra.corazza@uniud.it.ORCID 0000-0003-2272-1928
Giovanna LippeDepartment of Medicine, University of Udine, 33100, Udine, Italy. giovanna.lippe@uniud.it.ORCID 0000-0003-0042-5052

Funding

Ministero dell'Istruzione, dell'Università e della Ricerca (Ministry of Education, University and Research) LHFW42
6 · The paper itself

Abstract

Cyclophilin (CyP) D is a regulator of the mitochondrial F-ATP synthase. Here we report the discovery of a form of CyPD lacking the first 10 (mouse) or 13 (human) N-terminal residues (ΔN-CyPD), a protein region with species-specific features. NMR studies on recombinant human full-length CyPD (FL-CyPD) and ΔN-CyPD form revealed that the N-terminus is highly flexible, in contrast with the rigid globular part. We have studied the interactions of FL and ΔN-CyPD with F-ATP synthase at the OSCP subunit, a site where CyPD binding inhibits catalysis and favors the transition of the enzyme complex to the permeability transition pore. At variance from FL-CyPD, ΔN-CyPD binds OSCP in saline media, indicating that the N-terminus substantially decreases the binding affinity for OSCP. We also provide evidence that calpain 1 is responsible for generation of ΔN-CyPD in cells. Altogether, our work suggests the existence of a novel mechanism of modulation of CyPD through cleavage of its N-terminus that may have significant pathophysiological implications.

Indexed as

CyclophilinsPeptidyl-Prolyl Isomerase FProtein BindingAnimalsHumansMiceMitochondrial Proton-Translocating ATPasesPeptidyl-Prolyl Isomerase DProton-Translocating ATPasesCyclophilinsMitochondrial Proton-Translocating ATPasesPeptidyl-Prolyl Isomerase DPeptidyl-Prolyl Isomerase FPPID protein, humanPPIF protein, mouseProton-Translocating ATPases

Identifiers

PMID39528709
PMCPMC11555324

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.