Evidence map›Paper›PMID 39528493›Full record

ArticleNature communications2024

Spatial and temporal transmission dynamics of respiratory syncytial virus in New Zealand before and after the COVID-19 pandemic.

Lauren Jelley, Jordan Douglas, Meaghan O'Neill, Klarysse Berquist, Ana Claasen, Jing Wang, Srushti Utekar, Helen Johnston, Judy Bocacao, Margot Allais and 19 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  5. Observational
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  10. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors.

Lauren JelleyInstitute of Environmental Science and Research, Wellington, New Zealand.
Jordan DouglasCentre for Computational Evolution, University of Auckland, Auckland, New Zealand.ORCID 0000-0003-0371-9961
Meaghan O'NeillInstitute of Environmental Science and Research, Wellington, New Zealand.
Klarysse BerquistInstitute of Environmental Science and Research, Wellington, New Zealand.
Ana ClaasenInstitute of Environmental Science and Research, Wellington, New Zealand.
Jing WangInstitute of Environmental Science and Research, Wellington, New Zealand.ORCID 0000-0002-7002-2374
Srushti UtekarInstitute of Environmental Science and Research, Wellington, New Zealand.
Helen JohnstonInstitute of Environmental Science and Research, Wellington, New Zealand.
Judy BocacaoInstitute of Environmental Science and Research, Wellington, New Zealand.
Margot AllaisInstitute of Environmental Science and Research, Wellington, New Zealand.ORCID 0009-0001-0462-4641
Joep de LigtInstitute of Environmental Science and Research, Wellington, New Zealand.ORCID 0000-0002-0348-419X
Chor Ee TanInstitute of Environmental Science and Research, Wellington, New Zealand.
Ruth SeedsInstitute of Environmental Science and Research, Wellington, New Zealand.
Tim WoodInstitute of Environmental Science and Research, Wellington, New Zealand.
Nayyereh AminisaniInstitute of Environmental Science and Research, Wellington, New Zealand.
Tineke JenningsRegional Public Health, Te Whatu Ora - Health New Zealand Capital, Coast and Hutt Valley, Wellington, New Zealand.
David WelchCentre for Computational Evolution, University of Auckland, Auckland, New Zealand.
Nikki TurnerDepartment of General Practice and Primary Care, University of Auckland, Auckland, New Zealand.
Peter McIntyreDepartment of Primary Health Care and General Practice, University of Otago, Dunedin, New Zealand.
Tony DowellDepartment of Primary Health Care and General Practice, University of Otago, Dunedin, New Zealand.
Adrian TrenholmeTe Whatu Ora-Health New Zealand Counties Manukau, Auckland, New Zealand.
Cass ByrnesTe Whatu Ora-Health New Zealand Counties Manukau, Auckland, New Zealand.
SHIVERS investigation team
Paul ThomasDepartment of Host-Microbe Interactions, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-7955-0256
Richard WebbyDepartment of Host-Microbe Interactions, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-4397-7132
Nigel FrenchTāwharau Ora/School of Veterinary Science, Massey University, Palmerston North, New Zealand.ORCID 0000-0002-6334-0657
Q Sue HuangInstitute of Environmental Science and Research, Wellington, New Zealand.ORCID 0000-0002-3923-5195
David WinterInstitute of Environmental Science and Research, Wellington, New Zealand.
Jemma L GeogheganInstitute of Environmental Science and Research, Wellington, New Zealand. jemma.geoghegan@otago.ac.nz.ORCID 0000-0003-0970-0153

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00016 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBBY, RICHARD · 2021 to 2025
$91.4M
Household Respiratory Virus SARS-CoV-2 Transmission and Immunity Sub-Study (HRTS)U01AI144616 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GORDON, AUBREE L, THOMAS, PAUL G. · 2019 to 2025
$43.7M
NIAID NIH HHS 75N93021C00016NIAID NIH HHS U01 AI144616U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U01 AI 144616
6 · The paper itself

Abstract

Human respiratory syncytial virus (RSV) is a major cause of acute respiratory infection. In 2020, RSV was eliminated from New Zealand due to non-pharmaceutical interventions (NPI) used to control the spread of SARS-CoV-2. However, in 2021, following a brief quarantine-free travel agreement with Australia, there was a large-scale nationwide outbreak of RSV that led to reported cases more than five-times higher than typical seasonal patterns. We generated 1470 viral genomes of both RSV-A and RSV-B sampled between 2015-2022 from across New Zealand. Using a phylodynamics approach, we used these data to better understand RSV transmission patterns in New Zealand prior to 2020, and how RSV became re-established in the community following the relaxation of COVID-19 restrictions. We found that in 2021, there was a large epidemic of RSV due to an increase in importations, leading to several large genomic clusters of both RSV-A ON1 and RSV-B BA9 genotypes. However, while a number of viral importations were detected, there was also a major reduction in RSV genetic diversity compared to pre-pandemic years. These data reveal the impact of NPI used during the COVID-19 pandemic on other respiratory infections and highlight the important insights that can be gained from viral genomes.

Indexed as

COVID-19Respiratory Syncytial Virus, HumanRespiratory Syncytial Virus InfectionsSARS-CoV-2AdolescentAdultAgedAustraliaChildChild, PreschoolFemaleGenome, ViralGenotypeHumansInfantMale

Identifiers

PMID39528493
PMCPMC11555088

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.