Evidence map›Paper›PMID 39528484›Full record

ArticleNature communications2024

Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders.

Paolo Manghi, Michele Filosi, Moreno Zolfo, Lucas G Casten, Albert Garcia-Valiente, Stefania Mattevi, Vitor Heidrich, Davide Golzato, Samuel Perini, Andrew M Thomas and 13 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Review
  4. Article
  5. Review
  6. Dissecting the Ecological Structure of Health and Disease in the Global Gut Microbiome.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. The Microbiota in the Diagnosis and Treatment of Autism Spectrum Disorder.International journal of molecular sciences · 2026
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. [The Oral Microecological Theory of Dental Caries].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Paolo ManghiDepartment CIBIO, University of Trento, Trento, Italy. paolo.manghi@fmach.it.
Michele FilosiDepartment CIBIO, University of Trento, Trento, Italy.
Moreno ZolfoDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0001-6661-4046
Lucas G CastenDepartment of Psychiatry, University of Iowa, Iowa city, IA, USA.ORCID 0000-0001-7690-6405
Albert Garcia-ValienteDepartment CIBIO, University of Trento, Trento, Italy.
Stefania MatteviDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0002-3141-3145
Vitor HeidrichDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0001-6617-9187
Davide GolzatoDepartment CIBIO, University of Trento, Trento, Italy.
Samuel PeriniDepartment CIBIO, University of Trento, Trento, Italy.
Andrew M ThomasDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0001-5789-3354
Simone MontalbanoDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0002-9846-0560
Samuele CancellieriDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0003-2537-6728
Levi WaldronCUNY Graduate School of Public Health and Health Policy, Institute for Implementation Science in Public Health, New York, NY, USA.ORCID 0000-0003-2725-0694
Jacob B HallSimons Foundation, New York, NY, USA.ORCID 0009-0006-5650-6109
Simon XuSimons Foundation, New York, NY, USA.
Natalia VolfovskySimons Foundation, New York, NY, USA.
LeeAnne Green SnyderSimons Foundation, New York, NY, USA.
Pamela FelicianoSimons Foundation, New York, NY, USA.
Francesco AsnicarDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0003-3732-1468
Mireia Valles-ColomerMELIS Department, University Pompeu Fabra, Barcelona, Spain.ORCID 0000-0002-1988-6054
Jacob J MichaelsonDepartment of Psychiatry, University of Iowa, Iowa city, IA, USA.ORCID 0000-0001-9713-0992
Nicola SegataDepartment CIBIO, University of Trento, Trento, Italy. nicola.segata@unitn.it.ORCID 0000-0002-1583-5794
Enrico DomeniciDepartment CIBIO, University of Trento, Trento, Italy. enrico.domenici@unitn.it.ORCID 0000-0001-7436-6919

Funding

Exploiting Public Metagenomic Data to Uncover Cancer-Microbiome RelationshipsR01CA230551 · NCI · GRADUATE SCHOOL OF PUBLIC HEALTH AND HEALTH POLICY · PI Levi Waldron · 2020 to 2026
$3.9M
Exploiting public metagenomic data to uncover cancer-microbiome relationshipsU01CA230551 · NCI · GRADUATE SCHOOL OF PUBLIC HEALTH AND HEALTH POLICY · PI WALDRON, LEVI · 2019 to 2019
$464k
EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) MASTER-818368EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) ONCOBIOME-825410NCI NIH HHS R01 CA230551NCI NIH HHS U01 CA230551U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1U01CA230551
6 · The paper itself

Abstract

The link between the oral microbiome and neurodevelopmental disorders remains a compelling hypothesis, still requiring confirmation in large-scale datasets. Leveraging over 7000 whole-genome sequenced salivary samples from 2025 US families with children diagnosed with autism spectrum disorders (ASD), our cross-sectional study shows that the oral microbiome composition can discriminate ASD subjects from neurotypical siblings (NTs, AUC = 0.66), with 108 differentiating species (q < 0.005). The relative abundance of these species is highly correlated with cognitive impairment as measured by Full-Scale Intelligence Quotient (IQ). ASD children with IQ < 70 also exhibit lower microbiome strain sharing with parents (p < 10

Indexed as

Autism Spectrum DisorderBiomarkersMetagenomicsMicrobiotaMouthSalivaAdolescentChildChild, PreschoolCross-Sectional StudiesFemaleHumansMaleMetagenomeSiblingsBiomarkers

Identifiers

PMID39528484
PMCPMC11555315

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.