Evidence map›Paper›PMID 39528476›Full record

ArticleCell death & disease2024

Synergistic involvement of the NZF domains of the LUBAC accessory subunits HOIL-1L and SHARPIN in the regulation of LUBAC function.

Yusuke Toda, Hiroaki Fujita, Koshiki Mino, Takuto Koyama, Seiji Matsuoka, Toshie Kaizuka, Mari Agawa, Shigeyuki Matsumoto, Akiko Idei, Momoko Nishikori and 5 more

Abstract read
In one paragraph

Article in Cell death & disease, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yusuke TodaDepartment of Molecular and Cellular Physiology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Kyoto, 606-8501, Japan.
Hiroaki FujitaDepartment of Molecular and Cellular Physiology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Kyoto, 606-8501, Japan.ORCID 0000-0003-1465-6425
Koshiki MinoDrug Discovery Seed Compounds Exploratory Unit, RIKEN Center for Sustainable Resource Science, Wako, Saitama, 351-0198, Japan.
Takuto KoyamaDepartment of Biomedical Data Intelligence, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Kyoto, 606-8507, Japan.
Seiji MatsuokaDrug Discovery Seed Compounds Exploratory Unit, RIKEN Center for Sustainable Resource Science, Wako, Saitama, 351-0198, Japan.ORCID 0000-0002-9895-3103
Toshie KaizukaDrug Discovery Seed Compounds Exploratory Unit, RIKEN Center for Sustainable Resource Science, Wako, Saitama, 351-0198, Japan.
Mari AgawaDrug Discovery Seed Compounds Exploratory Unit, RIKEN Center for Sustainable Resource Science, Wako, Saitama, 351-0198, Japan.
Shigeyuki MatsumotoDepartment of Biomedical Data Intelligence, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Kyoto, 606-8507, Japan.
Akiko IdeiDrug Discovery Seed Compounds Exploratory Unit, RIKEN Center for Sustainable Resource Science, Wako, Saitama, 351-0198, Japan.
Momoko NishikoriDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Kyoto, 606-8507, Japan.
Yasushi OkunoDepartment of Biomedical Data Intelligence, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Kyoto, 606-8507, Japan.
Hiroyuki OsadaChemical Resource Development Research Unit, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan; Department of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, Shizuoka, 422-8526, Japan.ORCID 0000-0002-3606-4925
Minoru YoshidaDrug Discovery Seed Compounds Exploratory Unit, RIKEN Center for Sustainable Resource Science, Wako, Saitama, 351-0198, Japan.ORCID 0000-0002-4376-5674
Akifumi Takaori-KondoDepartment of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Kyoto, 606-8507, Japan.ORCID 0000-0001-7678-4284
Kazuhiro IwaiDepartment of Molecular and Cellular Physiology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto, Kyoto, 606-8501, Japan. kiwai@mcp.med.kyoto-u.ac.jp.ORCID 0000-0001-5620-5951

Funding

Japan Agency for Medical Research and Development (AMED) JP22ama121053MEXT | Japan Society for the Promotion of Science (JSPS) 17H06174MEXT | Japan Society for the Promotion of Science (JSPS) 18H05499MEXT | Japan Society for the Promotion of Science (JSPS) 22H04988
6 · The paper itself

Abstract

The linear ubiquitin chain assembly complex (LUBAC) plays crucial roles in NF-κB signaling and protection against cell death by generating linear ubiquitin chains. Its accessory subunits, HOIL-1L and SHARPIN, regulate LUBAC function by binding to ubiquitin chains via their Npl4 zinc finger (NZF) domains. However, the synergistic effects of the two NZF domains on LUBAC function remain unclear. Here, we demonstrate that the ubiquitin-binding activity of the two NZF domains cooperatively regulates LUBAC functions. Simultaneous loss of the ubiquitin-binding activity of the NZF domains profoundly impaired both NF-κB activation and cell death protection functions. HOIL-1L NZF robustly binds to linear ubiquitin chains, whereas SHARPIN NZF binds to Lys(K)63-linked ubiquitin chains in addition to linear chains. Binding of both NZF domains to linear ubiquitin chains regulated NF-κB signaling, whereas SHARPIN NZF predominantly regulated the cell death protection function independently of the ubiquitin chain type, K63-linked or linear ubiquitin. However, concomitant loss of linear ubiquitin binding by HOIL-1L NZF drastically impaired cell death protection. A screen of compounds capable of inhibiting binding between HOIL-1L NZF and linear ubiquitin chains identified a small compound that inhibited SHARPIN NZF as well as HOIL-1L NZF binding to linear ubiquitin chains, supporting the synergistic effect of the two NZF domains on cell death protection and suggesting a potential therapeutic strategy for targeting increased LUBAC activity in diseases such as cancer.

Indexed as

NF-kappa BUbiquitinUbiquitin-Protein LigasesAnimalsHEK293 CellsHumansMiceProtein BindingProtein DomainsSignal TransductionUbiquitinationUbiquitinsZinc FingersNF-kappa BSHARPIN protein, humanUbiquitinUbiquitin-Protein LigasesUbiquitins

Identifiers

PMID39528476
PMCPMC11555115

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.