Evidence map›Paper›PMID 39528459›Full record

ArticleNature communications2024

A cyclic peptide toolkit reveals mechanistic principles of peptidylarginine deiminase IV regulation.

M Teresa Bertran, Robert Walmsley, Thomas Cummings, Iker Valle Aramburu, Donald J Benton, Rocio Mora Molina, Jayalini Assalaarachchi, Maria Chasampalioti, Tessa Swanton, Dhira Joshi and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Article
  3. ChemBioParis 2025: Approaching Biology Through Chemistry in the City of Light.Chembiochem : a European journal of chemical biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. De novo discovery of bicyclic cysteine-rich peptides targeting gasdermin D.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Glycosaminoglycans activate peptidylarginine deiminase 4 by enhancing calcium affinity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Review
  15. Article
  16. Article
  17. Structural insight into the function of human peptidyl arginine deiminase 6.Computational and structural biotechnology journal · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

M Teresa Bertran *Protein-Protein Interaction Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-8336-0903
Robert Walmsley *Epigenetics, The Babraham Institute, Cambridge, CB22 3AT, UK.ORCID 0000-0003-3510-7214
Thomas CummingsEpigenetics, The Babraham Institute, Cambridge, CB22 3AT, UK.ORCID 0000-0001-5214-9796
Iker Valle AramburuAntimicrobial Defense Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.
Donald J BentonStructural Biology, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0001-6748-9339
Rocio Mora MolinaEpigenetics, The Babraham Institute, Cambridge, CB22 3AT, UK.ORCID 0000-0001-7256-732X
Jayalini AssalaarachchiEpigenetics, The Babraham Institute, Cambridge, CB22 3AT, UK.ORCID 0000-0002-6067-0845
Maria ChasampaliotiEpigenetics, The Babraham Institute, Cambridge, CB22 3AT, UK.ORCID 0000-0001-9782-3107
Tessa SwantonAntimicrobial Defense Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0003-1776-080X
Dhira JoshiChemical Biology, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0001-8660-2528
Stefania FedericoChemical Biology, The Francis Crick Institute, London, NW1 1AT, UK.
Hanneke OkkenhaugImaging, The Babraham Institute, Cambridge, CB22 3AT, UK.
Lu YuProteomics, The Babraham Institute, Cambridge, CB22 3AT, UK.ORCID 0000-0001-8378-9112
David OxleyProteomics, The Babraham Institute, Cambridge, CB22 3AT, UK.
Simon WalkerImaging, The Babraham Institute, Cambridge, CB22 3AT, UK.
Venizelos PapayannopoulosAntimicrobial Defense Laboratory, The Francis Crick Institute, London, NW1 1AT, UK.ORCID 0000-0002-3741-8190
Hiroaki SugaThe University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.ORCID 0000-0002-5298-9186
Maria A ChristophorouEpigenetics, The Babraham Institute, Cambridge, CB22 3AT, UK. maria.christophorou@babraham.ac.uk.ORCID 0000-0001-5455-7283
Louise J WalportProtein-Protein Interaction Laboratory, The Francis Crick Institute, London, NW1 1AT, UK. l.walport@imperial.ac.uk.ORCID 0000-0002-3795-8365

Funding

Cancer Research UK (CRUK) CC2030, CC2089RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BBS/E/B/000C0421RCUK | Medical Research Council (MRC) CC2030, CC2089Wellcome Trust (Wellcome) 105642/Z/14/ZWellcome Trust (Wellcome) CC2030, CC2089Wellcome Trust (Wellcome) SHWF 222825/Z/21/Z
6 · The paper itself

Abstract

Peptidylarginine deiminase IV (PADI4, PAD4) deregulation promotes the development of autoimmunity, cancer, atherosclerosis and age-related tissue fibrosis. PADI4 additionally mediates immune responses and cellular reprogramming, although the full extent of its physiological roles is unexplored. Despite detailed molecular knowledge of PADI4 activation in vitro, we lack understanding of its regulation within cells, largely due to a lack of appropriate systems and tools. Here, we develop and apply a set of potent and selective PADI4 modulators. Using the mRNA-display-based RaPID system, we screen >10

Indexed as

Peptides, CyclicProtein-Arginine Deiminase Type 4Allosteric RegulationEnzyme InhibitorsHEK293 CellsHumansHydrolasesProtein-Arginine DeiminasesEnzyme InhibitorsHydrolasesPADI4 protein, humanPeptides, CyclicProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4

Identifiers

PMID39528459
PMCPMC11555231

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.