Evidence map›Paper›PMID 39526838›Full record

ReviewJournal of clinical microbiology2024

Nomenclature for human and animal fungal pathogens and diseases: a proposal for standardized terminology.

Sybren de Hoog, Thomas J Walsh, Sarah A Ahmed, Ana Alastruey-Izquierdo, Maiken Cavling Arendrup, Andrew Borman, Sharon Chen, Anuradha Chowdhary, Robert C Colgrove, Oliver A Cornely and 33 more

Abstract readReview
In one paragraph

Review in Journal of clinical microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Beyond candidiasis: should infections caused byJournal of clinical microbiology · 2026
    Article
  3. Review
  4. Name changes for fungi of medical importance, 2022-2024.Journal of clinical microbiology · 2025
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Sybren de HoogRadboudumc-CWZ Centre of Expertise for Mycology, Nijmegen, the Netherlands.ORCID 0000-0002-5344-257X
Thomas J WalshCenter for Innovative Therapeutics and Diagnostics, Richmond, Virginia, USA.ORCID 0000-0002-4142-8711
Sarah A AhmedRadboudumc-CWZ Centre of Expertise for Mycology, Nijmegen, the Netherlands.
Ana Alastruey-IzquierdoMycology Reference Laboratory, Spanish National Centre for Microbiology, Madrid, Spain.ORCID 0000-0001-8651-4405
Maiken Cavling ArendrupDepartment of Microbiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark.ORCID 0000-0002-4747-0144
Andrew BormanNational Mycology Reference Laboratory, Public Health England, Bristol, United Kingdom.ORCID 0000-0003-0585-5721
Sharon ChenCentre for Infectious Diseases and Microbiology Laboratory Services, Westmead, Australia.
Anuradha ChowdharyMedical Mycology Unit, Department of Microbiology, Vallabhbhai Patel Chest Institute, University of Delhi, Delhi, India.
Robert C ColgroveDivision of Infectious Diseases, Mount Auburn Hospital, and Harvard Medical School, Cambridge, Massachusetts, USA.
Oliver A CornelyUniversity of Cologne, Faculty of Medicine, Institute of Translational Research, Cologne, Germany.
David W DenningManchester Fungal Infection Group, Academic Health Science Centre, University of Manchester, Manchester, United Kingdom.
Philippe J DufresneLaboratoire de Santé Publique du Québec, Institut National de Santé Publique du Québec, Sainte-Anne-de-Bellevue, Canada.
Laura FilkinsDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.ORCID 0000-0002-0406-4947
Jean-Pierre GangneuxDepartment of Mycology, Centre Hospitalier Universitaire de Rennes, Centre National de Référence Aspergilloses chroniques, ECMM Excellence Center in Mycology, Rennes, France.
Josepa GenéUnitat de Micologia i Microbiologia Ambiental, Facultat de Medicina i Ciènces de la Salut, Universitat Rovira i Virgili, Reus, Spain.ORCID 0000-0001-6195-9299
Andreas H GrollInfectious Disease Research Program, Department of Pediatric Hematology and Oncology, University Children's Hospital Münster, Münster, Germany.ORCID 0000-0003-1188-393X
Jaques GuillotOniris, VetAgroBio Nantes, IRF, SFR ICAT, Université d'Angers, Angers, France.
Gerhard HaaseLaboratory Diagnostic Center, RWTH Aachen University Hospital, Aachen, Germany.
Catriona HallidayCentre for Infectious Diseases and Microbiology Laboratory Services, Westmead, Australia.
David L HawksworthRoyal Botanic Gardens, Kew, Richmond, United Kingdom.
Roderick HaySt. John's Institute of Dermatology, King's College London, London, United Kingdom.
Martin HoeniglDivision of Infectious Diseases, Medical University of Graz, Graz, Austria.ORCID 0000-0002-1653-2824
Vit HubkaDepartment of Botany, Charles University, Prague, Czechia.
Tomasz JagielskiDepartment of Medical Microbiology, University of Warsaw, Warsaw, Poland.
Hazal KandemirWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Sarah E KiddNational Mycology Reference Centre, SA Pathology, Adelaide, Australia.ORCID 0000-0002-5957-4178
Julianne V KusPublic Health Ontario Toronto, Toronto, Canada.ORCID 0000-0001-6033-7244
June Kwon-ChungNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.ORCID 0000-0001-6671-0994
Shawn R LockhartCenters for Disease Control and Prevention, Atlanta, Georgia, USA.ORCID 0000-0002-4383-5994
Jacques F MeisRadboudumc-CWZ Centre of Expertise for Mycology, Nijmegen, the Netherlands.ORCID 0000-0003-3253-6080
Leonel MendozaMicrobiology and Molecular Genetics, Biomedical Laboratory Diagnostics, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0002-7769-2151
Wieland MeyerWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
M Hong NguyenUniversity of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.ORCID 0000-0003-2065-3239
Yinggai SongDepartment of Dermatology, Peking University First Hospital, Peking University, Beijing, China.
Tania C SorrellSydney Infectious Diseases Institute, Faculty of Medicine and Health, University of Sydney, Sydney, Australia.
J Benjamin StielowBioinformatics, Helmholtz Institute for One Health, Greifswald, Germany.
Rachel VilelaMicrobiology and Molecular Genetics, Biomedical Laboratory Diagnostics, Michigan State University, East Lansing, Michigan, USA.
Roxana G VitaleCONICET (Consejo Nacional de Investigaciones Científicas y Tecnológicas), Hospital JM Ramos Mejía, Buenos Aires, Argentina.ORCID 0000-0001-8425-0856
Nancy L WengenackDivision of Clinical Microbiology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0003-2853-8219
P Lewis WhitePublic Health Wales Microbiology, Cardiff, United Kingdom.ORCID 0000-0003-3056-4205
Luis Ostrosky-ZeichnerMcGovern Medical School, Division of Infectious Diseases, University of Texas Health Science Center, Houston, Texas, USA.
Sean X ZhangJohns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0003-1166-2563
ISHAM/ECMM/FDLC Working Group Nomenclature of Clinical Fungi

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
NIAID NIH HHS P30 AI036214
6 · The paper itself

Abstract

Medically important pathogenic fungi invade vertebrate tissue and are considered primary when part of their nature life cycle is associated with an animal host and are usually able to infect immunocompetent hosts. Opportunistic fungal pathogens complete their life cycle in environmental habitats or occur as commensals within or on the vertebrate body, but under certain conditions can thrive upon infecting humans. The extent of host damage in opportunistic infections largely depends on the portal and modality of entry as well as on the host's immune and metabolic status. Diseases caused by primary pathogens and common opportunists, causing the top approximately 80% of fungal diseases [D. W. Denning, Lancet Infect Dis, 24:e428-e438, 2024, https://doi.org/10.1016/S1473-3099(23)00692-8], tend to follow a predictive pattern, while those by occasional opportunists are more variable. For this reason, it is recommended that diseases caused by primary pathogens and the common opportunists are named after the etiologic agent, for example, histoplasmosis and aspergillosis, while this should not be done for occasional opportunists that should be named as [causative fungus] [clinical syndrome], for example,

Indexed as

FungiMycosesTerminology as TopicAnimalsHumansOpportunistic Infectionsfungal diseasenomenclatureproposal

Identifiers

PMID39526838
PMCPMC11633119

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.