Evidence map›Paper›PMID 39526374›Full record

ArticleNucleic acids research2024

PWOs repress gene transcription by regulating chromatin structures in Arabidopsis.

Tingting Yang, Dingyue Wang, Lingxiao Luo, Xiaochang Yin, Zhihan Song, Minqi Yang, Yue Zhou

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tingting YangState Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing 100871, China.ORCID 0000-0002-2968-7702
Dingyue WangState Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing 100871, China.ORCID 0000-0002-1027-7455
Lingxiao LuoState Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing 100871, China.ORCID 0000-0002-2220-0500
Xiaochang YinState Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing 100871, China.ORCID 0000-0001-9272-1662
Zhihan SongState Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing 100871, China.
Minqi YangState Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing 100871, China.ORCID 0000-0003-3467-3759
Yue ZhouState Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing 100871, China.ORCID 0000-0002-2507-7990

Funding

Biological Breeding-National Science and Technology Major Project 2023ZD04073CAS Youth Interdisciplinary Team JCTD-2022-06China Postdoctoral Science Foundation 2023M730085National Natural Science Foundation of China 32370612Postdoctoral Fellowship Program of CPSF GZC20230083State Key Laboratory of Protein and Plant Gene Research
6 · The paper itself

Abstract

PWWP-DOMAIN INTERACTOR OF POLYCOMBS (PWO) family proteins play a vital role in regulating plant development. However, the molecular mechanisms of how PWOs regulate chromatin structure is elusive. Our data show that the PWO1 binding sites are enriched with positive modifications but exclusive with H3K27me3. Moreover, PWO1 binds to the H3K27me3-enriched compartment domain (H3K27me3-CD) boundary regions, and functions to maintain the boundary strength. Meanwhile, we found that PWOs and Polycomb repressive complex 2 (PRC2) function parallelly in maintaining H3K27me3-CDs' structure. Loss of either PWOs or PRC2 leads to H3K27me3-CD strength reduction, B to A compartment switching as well as the H3K27me3-CD relocating away from the nuclear periphery. Additionally, PWOs and lamin-like proteins collaborate to regulate multiple chromatin structures to repress gene transcription within H3K27me3-CDs. We conclude that PWOs maintain H3K27me3-CDs' repressive state and regulate their spatial position in the nucleus.

Indexed as

ArabidopsisArabidopsis ProteinsChromatinGene Expression Regulation, PlantHistonesBinding SitesCell NucleusPolycomb-Group ProteinsPolycomb Repressive Complex 2Protein BindingTranscription, GeneticArabidopsis ProteinsAT1G52740 protein, ArabidopsisChromatinHistonesPolycomb-Group ProteinsPolycomb Repressive Complex 2

Identifiers

PMID39526374
PMCPMC11602166

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.