Evidence map›Paper›PMID 39525413›Full record

ReviewForestry research2022

Current status and trends in forest genomics.

Dulal Borthakur, Victor Busov, Xuan Hieu Cao, Qingzhang Du, Oliver Gailing, Fikret Isik, Jae-Heung Ko, Chenghao Li, Quanzi Li, Shihui Niu and 6 more

Abstract readReview
In one paragraph

Review in Forestry research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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  19. Review
  20. Phylogeography ofForestry research · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Dulal Borthakur *Dulal Borthakur, Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, 1955 East-West Road, Honolulu, HI 96822, USA.
Victor Busov *College of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI 49931, USA.
Xuan Hieu Cao *Forest Genetics and Forest Tree Breeding, Faculty for Forest Sciences and Forest Ecology, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany.
Qingzhang Du *National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, P.R. China.
Oliver Gailing *Forest Genetics and Forest Tree Breeding, Faculty for Forest Sciences and Forest Ecology, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany.
Fikret Isik *Cooperative Tree Improvement Program, North Carolina State University, Raleigh, NC 27695, USA.
Jae-Heung Ko *Department of Plant & Environmental New Resources, Kyung Hee University, 1732 Deogyeong-daero, Yongin 17104, Republic of Korea.
Chenghao Li *State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, P.R. China.
Quanzi Li *State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100093, P.R. China.
Shihui Niu *National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, P.R. China.
Guanzheng Qu *State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, P.R. China.
Thi Ha Giang Vu *Forest Genetics and Forest Tree Breeding, Faculty for Forest Sciences and Forest Ecology, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany.
Xiao-Ru Wang *Department of Ecology and Environmental Science, Umeå Plant Science Centre, Umeå University, Umeå 90187, Sweden.
Zhigang Wei *College of Life Sciences, Heilongjiang University, Harbin 150080, P. R. China.
Lin Zhang *Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees, Ministry of Education, Central South University of Forestry and Technology, Changsha 410004, Hunan Province, P.R. China.
Hairong Wei *College of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI 49931, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Forests are not only the most predominant of the Earth's terrestrial ecosystems, but are also the core supply for essential products for human use. However, global climate change and ongoing population explosion severely threatens the health of the forest ecosystem and aggravtes the deforestation and forest degradation. Forest genomics has great potential of increasing forest productivity and adaptation to the changing climate. In the last two decades, the field of forest genomics has advanced quickly owing to the advent of multiple high-throughput sequencing technologies, single cell RNA-seq, clustered regularly interspaced short palindromic repeats (CRISPR)-mediated genome editing, and spatial transcriptomes, as well as bioinformatics analysis technologies, which have led to the generation of multidimensional, multilayered, and spatiotemporal gene expression data. These technologies, together with basic technologies routinely used in plant biotechnology, enable us to tackle many important or unique issues in forest biology, and provide a panoramic view and an integrative elucidation of molecular regulatory mechanisms underlying phenotypic changes and variations. In this review, we recapitulated the advancement and current status of 12 research branches of forest genomics, and then provided future research directions and focuses for each area. Evidently, a shift from simple biotechnology-based research to advanced and integrative genomics research, and a setup for investigation and interpretation of many spatiotemporal development and differentiation issues in forest genomics have just begun to emerge.

Indexed as

CRISPR-mediated genome editingForest genetic diversity and climate adaptionGenome assemblyHaploid inductionPerennial growth and seasonality regulationQTL, association Studies, and genomic selectionSingle cell RNA-seqSystems biology and data analysisTransformation and regenerationWood formation

Identifiers

PMID39525413
PMCPMC11524260

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.