Evidence map›Paper›PMID 39524907›Full record

ArticleNpj biosensing2024

Energy landscape of conformational changes for a single unmodified protein.

Matthew Peters, Tianyu Zhao, Sherin George, Viet Giang Truong, Síle Nic Chormaic, Cuifeng Ying, René A Nome, Reuven Gordon

Abstract read
In one paragraph

Article in Npj biosensing, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Matthew PetersDepartment of Electrical Engineering, University of Victoria, Victoria, V8W 2Y2 BC Canada.
Tianyu ZhaoDepartment of Electrical Engineering, University of Victoria, Victoria, V8W 2Y2 BC Canada.
Sherin GeorgeDepartment of Electrical Engineering, University of Victoria, Victoria, V8W 2Y2 BC Canada.
Viet Giang TruongOkinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495 Japan.
Síle Nic ChormaicOkinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495 Japan.
Cuifeng YingAdvanced Optics and Photonics Laboratory, Department of Engineering, School of Science & Technology, Nottingham Trent University, Nottingham, NG11 8NS England.
René A NomeInstitute of Chemistry, State University of Campinas, Campinas, Brazil.
Reuven GordonDepartment of Electrical Engineering, University of Victoria, Victoria, V8W 2Y2 BC Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Resolving the free energy landscapes that govern protein biophysics has been obscured by ensemble averaging. While the folding dynamics of single proteins have been observed using fluorescent labels and/or tethers, a simpler and more direct measurement of the conformational changes would not require modifications to the protein. We use nanoaperture optical tweezers to resolve the energy landscape of a single unmodified protein, Bovine Serum Albumin (BSA), and quantify changes in the three-state conformation dynamics with temperature. A Markov model with Kramers' theory transition rates is used to model the dynamics, showing good agreement with the observed state transitions. This first look at the intrinsic energy landscape of proteins provides a transformative tool for protein biophysics and may be applied broadly, including mapping out the energy landscape of particularly challenging intrinsically disordered proteins.

Indexed as

BiophysicsMolecular biophysicsOptical techniquesProteins

Identifiers

PMID39524907
PMCPMC11541220

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.