Evidence map›Paper›PMID 39524776›Full record

ArticleHeliyon2024

Enhancing drug-target interaction predictions in context of neurodegenerative diseases using bidirectional long short-term memory in male Swiss albino mice pharmaco-EEG analysis.

Shahnawaz Qureshi, Syed Muhammad Zeeshan Iqbal, Asif Ameer, Seppo Karrila, Yazeed Yasin Ghadi, Syed Aziz Shah

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Article in Heliyon, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Shahnawaz QureshiIntelligent Biomedical Application Lab, Sino-Pak center for Artificial Intelligence, School of Computing, Pak-Austria Fachhochschule: Institute of Applied Sciences and Technology, Mang Haripur, 22620, Pakistan.
Syed Muhammad Zeeshan IqbalResearch and Development, BrightWare LLC, Riyadh, 13323, Saudi Arabia.
Asif AmeerDepartment of Computer Science, National University of Computing and Emerging Sciences, Faisalabad, 38000, Pakistan.
Seppo KarrilaFaculty of Science and Industrial Technology, Prince of Songkla University, Surat Thani Campus, Muang, Surat Thani, 84000, Thailand.
Yazeed Yasin GhadiDepartment of Computer Science, Al Ain University Abu Dhab, Al Ain, United Arab Emirates.
Syed Aziz ShahHealthcare Sensing Technology, Faculty Research Centre for Intelligent Healthcare, Coventry University, Coventry, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Objective: Emerging diseases like Parkinson or Alzheimer's, which are not curable, endanger human mental health and are challenging to research. Drug target interactions (DTI) are pivotal in the screening of candidate drugs and focus on a small pool of drug targets. Electroencephalogram shows the responses to psychotropic medicines in the brain bioelectric activity. Synaptic activity can be analyzed by using Local Field Potential recordings obtained from micro-electrodes implanted in the brain. The aim is to evaluate the effects of drug on brain bioelectric activity and increase the drug classification accuracy. The ultimate goal is to advance our understanding of how drugs affect synaptic activity and open the door to more focused treatment for neurodegenerative diseases. Methods: In this study, Pharmaco-EEG recordings are processed using Advanced neural network models, particularly Convolutional Neural Networks, to assess the effects of medications. The five different medicines used in this study are Ephedrine, Fluoxetine, Kratom, Morphine, and Saline. The signals observed are local field potential signals. To overcome some limits of DTI prediction, we propose Bidirectional Long Short-Term Memory (LSTM) for the categorization of intracranial EEG (i-EEG) data, departing from standard approaches. Similar EEG patterns are presumably caused by drugs that work by homologous pharmacological pathways, producing similar psychotropic effects. To improve accuracy and reduce training loss, our study introduces a bidirectional LSTM model for classification along with Bayesian optimization. Results: High recall, precision, and F1-Scores, particularly a 95% F1-Score for morphine, ephedrine, fluoxetine, and saline, suggest good performance in predicting these drug classes. Kratom produces a somewhat lower recall of 94%, but a high F1-Score of 97% and perfect precision of 1.00. The weighted average F1-Score, macro average, and overall accuracy are all consistently high (around 97%), indicating that the model works well throughout the spectrum of drugs. Conclusions: Improved model performance was demonstrated by using a diversified dataset with five drug categories and bidirectional LSTM boosted with Bayesian optimization for hyperparameter tuning. From earlier limited-category models, it represents a substantial advancement.

Indexed as

Convolutional neural networkDrug target interactionIntracranial EEGLocal field potentialLong short-term memory

Identifiers

PMID39524776
PMCPMC11550650

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.