Evidence map›Paper›PMID 39523439›Full record

ArticleCommunications biology2024

The kinase NEK6 positively regulates LSD1 activity and accumulation in local chromatin sub-compartments.

Franziska Knodel, Jürgen Eirich, Sabine Pinter, Stephan A Eisler, Iris Finkemeier, Philipp Rathert

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Franziska KnodelDepartment of Biochemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Stuttgart, Germany.ORCID 0000-0003-4708-614X
Jürgen EirichInstitute of Plant Biology and Biotechnology, University of Münster, Münster, Germany.ORCID 0000-0003-0963-1872
Sabine PinterDepartment of Biochemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Stuttgart, Germany.
Stephan A EislerStuttgart Research Center Systems Biology (SRCSB), University of Stuttgart, Stuttgart, Germany.
Iris FinkemeierInstitute of Plant Biology and Biotechnology, University of Münster, Münster, Germany.ORCID 0000-0002-8972-4026
Philipp RathertDepartment of Biochemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Stuttgart, Germany. philipp.rathert@ibtb.uni-stuttgart.de.ORCID 0000-0003-1477-136X

Funding

Deutsche Krebshilfe (German Cancer Aid) 70113426Deutsche Krebshilfe (German Cancer Aid) 70113433Wilhelm Sander-Stiftung (Wilhelm Sander Foundation) 2020.055.1
6 · The paper itself

Abstract

LSD1 plays a crucial role in mammalian biology, regulated through interactions with coregulators and post-translational modifications. Here we show that the kinase NEK6 stimulates LSD1 activity in cells and observe a strong colocalization of NEK6 and LSD1 at distinct chromatin sub-compartments (CSCs). We demonstrate that LSD1 is a substrate for NEK6 phosphorylation at the N-terminal intrinsically disordered region (IDR) of LSD1, which shows phase separation behavior in vitro and in cells. The LSD1-IDR is important for LSD1 activity and functions to co-compartmentalize NEK6, histone peptides and DNA. The subsequent phosphorylation of LSD1 by NEK6 supports the concentration of LSD1 at these distinct CSCs, which is imperative for dynamic control of transcription. This suggest that phase separation is crucial for the regulatory function of LSD1 and our findings highlight the role of NEK6 in modulating LSD1 activity and phase separation, expanding our understanding of LSD1 regulation and its implications in cellular processes.

Indexed as

ChromatinHistone DemethylasesNIMA-Related KinasesHEK293 CellsHumansPhosphorylationChromatinHistone DemethylasesKDM1A protein, humanNEK6 protein, humanNIMA-Related Kinases

Identifiers

PMID39523439
PMCPMC11551153

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.