Evidence map›Paper›PMID 39523413›Full record

ArticleNature communications2024

Multiomics dissection of Brassica napus L. lateral roots and endophytes interactions under phosphorus starvation.

Can Liu, Zhen Bai, Yu Luo, Yanfeng Zhang, Yongfeng Wang, Hexin Liu, Meng Luo, Xiaofang Huang, Anle Chen, Lige Ma and 20 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Review
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  10. Article
  11. Review
  12. Article
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  14. Article
  15. Article
  16. Microbial drivers of root plasticity.The New phytologist · 2025
    Review
  17. Article
  18. Identification of miRNAs and Their Targets inInternational journal of molecular sciences · 2025
    Article
  19. Article
  20. Whole genome sequence ofFrontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Can Liu *College of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Zhen Bai *College of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Yu Luo *College of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Yanfeng Zhang *Hybrid Rapeseed Research Center of Shaanxi Province, Yangling, Shaanxi, 712100, China.
Yongfeng Wang *College of Agriculture, State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, Henan, China.
Hexin Liu *College of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Meng LuoShanghai Majorbio Research Institute, Shanghai, 201203, PR China.
Xiaofang HuangCrop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, Bonn, Germany.ORCID 0009-0005-2260-7238
Anle ChenCollege of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Lige MaCollege of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Chen ChenCollege of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Jinwei YuanCollege of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Ying XuInstitute of Crop Science, Zhejiang University, Hangzhou, 310058, China.
Yantao ZhuHybrid Rapeseed Research Center of Shaanxi Province, Yangling, Shaanxi, 712100, China.
Jianxin MuHybrid Rapeseed Research Center of Shaanxi Province, Yangling, Shaanxi, 712100, China.
Ran AnHybrid Rapeseed Research Center of Shaanxi Province, Yangling, Shaanxi, 712100, China.
Cuiling YangCollege of Agriculture, State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, Henan, China.
Hao ChenCollege of Agriculture, State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, Henan, China.
Jiajie ChenResearch Center for Intelligent Computing Platforms, Zhejiang Lab, Hangzhou, 310012, China.
Zaifang LiResearch Center for Intelligent Computing Platforms, Zhejiang Lab, Hangzhou, 310012, China.
Xiaodan LiShanghai Majorbio Research Institute, Shanghai, 201203, PR China.
Yachen DongShanghai Majorbio Research Institute, Shanghai, 201203, PR China.
Jianhua ZhaoShanghai Majorbio Research Institute, Shanghai, 201203, PR China.
Xingxing ShenInstitute of Crop Science, Zhejiang University, Hangzhou, 310058, China.ORCID 0000-0001-5765-1419
Lixi JiangInstitute of Crop Science, Zhejiang University, Hangzhou, 310058, China.ORCID 0000-0002-8579-0763
Xianzhong FengResearch Center for Intelligent Computing Platforms, Zhejiang Lab, Hangzhou, 310012, China.ORCID 0000-0002-7129-3731
Peng YuCrop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, Bonn, Germany. yupeng@uni-bonn.de.ORCID 0000-0003-1670-8428
Daojie WangCollege of Agriculture, State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, Henan, China. wangdj@henu.edu.cn.ORCID 0000-0002-8696-1464
Xinping ChenCollege of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China. chenxp2017@swu.edu.cn.ORCID 0000-0002-6245-0133
Nannan LiCollege of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China. linannan2013@swu.edu.cn.ORCID 0000-0001-6592-7622

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many plants associate with endophytic microbes that improve root phosphorus (P) uptake. Understanding the interactions between roots and endophytes can enable efforts to improve P utilization. Here, we characterize the interactions between lateral roots of endophytes in a core collection of 50 rapeseed (Brassica napus L.) genotypes with differing sensitivities to low P conditions. With the correlation analysis result between bacterial abundance and plant physiological indices of rapeseeds, and inoculation experiments on plates and soil, we identify one Flavobacterium strain (C2) that significantly alleviates the P deficiency phenotype of rapeseeds. The underlying mechanisms are explored by performing the weighted gene coexpression network analysis (WGCNA), and conducting genome-wide association studies (GWAS) using Flavobacterium abundance as a quantitative trait. Under P-limited conditions, C2 regulates fatty acid and lipid metabolic pathways. For example, C2 improves metabolism of linoleic acid, which mediates root suberin biosynthesis, and enhances P uptake efficiency. In addition, C2 suppresses root jasmonic acid biosynthesis, which depends on α-linolenic acid metabolism, improving C2 colonization and activating P uptake. This study demonstrates that adjusting the endophyte composition can modulate P uptake in B. napus plants, providing a basis for developing agricultural microbial agents.

Indexed as

Brassica napusEndophytesGenome-Wide Association StudyPhosphorusPlant RootsCyclopentanesFatty AcidsFlavobacteriumGene Expression Regulation, PlantGene Regulatory NetworksGenotypeLipid MetabolismMultiomicsOxylipinsCyclopentanesFatty Acidsjasmonic acidOxylipinsPhosphorus

Identifiers

PMID39523413
PMCPMC11551189

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.