Evidence map›Paper›PMID 39519111›Full record

ArticleInternational journal of molecular sciences2024

Discovery of Plasma Lipids as Potential Biomarkers Distinguishing Breast Cancer Patients from Healthy Controls.

Desmond Li, Kerry Heffernan, Forrest C Koch, David A Peake, Dana Pascovici, Mark David, Cheka Kehelpannala, G Bruce Mann, David Speakman, John Hurrell and 3 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Desmond LiBCAL Diagnostics Ltd., Sydney, NSW 2000, Australia.
Kerry HeffernanBCAL Diagnostics Ltd., Sydney, NSW 2000, Australia.
Forrest C KochOmniOmics.ai Pty Ltd., Pagewood, NSW 2035, Australia.
David A PeakeBCAL Diagnostics Ltd., Sydney, NSW 2000, Australia.
Dana PascoviciInsightStats, Croydon Park, NSW 2133, Australia.
Mark DavidBCAL Diagnostics Ltd., Sydney, NSW 2000, Australia.
Cheka KehelpannalaBCAL Diagnostics Ltd., Sydney, NSW 2000, Australia.
G Bruce MannDepartment of Surgery, The Royal Melbourne Hospital, Parkville, VIC 3050, Australia.
David SpeakmanThe Peter MacCallum Cancer Centre, Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, VIC 3010, Australia.
John HurrellBCAL Diagnostics Ltd., Sydney, NSW 2000, Australia.
Simon PrestonBCAL Diagnostics Ltd., Sydney, NSW 2000, Australia.
Fatemeh VafaeeOmniOmics.ai Pty Ltd., Pagewood, NSW 2035, Australia.
Amani BatarsehBCAL Diagnostics Ltd., Sydney, NSW 2000, Australia.ORCID 0000-0002-7020-2498

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of a sensitive and specific blood test for the early detection of breast cancer is crucial to improve screening and patient outcomes. Existing methods, such as mammography, have limitations, necessitating the exploration of alternative approaches, including circulating factors. Using 598 prospectively collected blood samples, a multivariate plasma-derived lipid biomarker signature was developed that can distinguish healthy control individuals from those with breast cancer. Liquid chromatography with high-resolution and tandem mass spectrometry (LC-MS/MS) was employed to identify lipids for both extracellular vesicle-derived and plasma-derived signatures. For each dataset, we identified a signature of 20 lipids using a robust, statistically rigorous feature selection algorithm based on random forest feature importance applied to cross-validated training samples. Using an ensemble of machine learning models, the plasma 20-lipid signature generated an area under the curve (AUC) of 0.95, sensitivity of 0.91, and specificity of 0.79. The results from this study indicate that lipids extracted from plasma can be used as target analytes in the development of assays to detect the presence of early-stage breast cancer.

Indexed as

Biomarkers, TumorBreast NeoplasmsLipidsAdultAgedCase-Control StudiesChromatography, LiquidEarly Detection of CancerFemaleHumansMachine LearningMiddle AgedTandem Mass SpectrometryBiomarkers, TumorLipidsbiomarkerbreast cancercancer diagnosticlipidsliquid biopsymachine learning

Identifiers

PMID39519111
PMCPMC11546708

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.