Evidence map›Paper›PMID 39518959›Full record

ReviewInternational journal of molecular sciences2024

Integrative Metabolome and Proteome Analysis of Cerebrospinal Fluid in Parkinson's Disease.

Seok Gi Kim, Ji Su Hwang, Nimisha Pradeep George, Yong Eun Jang, Minjun Kwon, Sang Seop Lee, Gwang Lee

Abstract readReview
In one paragraph

Review in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Seok Gi KimDepartment of Molecular Science and Technology, Ajou University, Suwon 16499, Republic of Korea.ORCID 0000-0002-5914-2471
Ji Su HwangDepartment of Molecular Science and Technology, Ajou University, Suwon 16499, Republic of Korea.ORCID 0000-0001-9422-1880
Nimisha Pradeep GeorgeDepartment of Molecular Science and Technology, Ajou University, Suwon 16499, Republic of Korea.
Yong Eun JangDepartment of Molecular Science and Technology, Ajou University, Suwon 16499, Republic of Korea.ORCID 0000-0002-1297-7455
Minjun KwonDepartment of Molecular Science and Technology, Ajou University, Suwon 16499, Republic of Korea.ORCID 0009-0001-0045-1958
Sang Seop LeeDepartment of Pharmacology, Inje University College of Medicine, Busan 50834, Republic of Korea.
Gwang LeeDepartment of Molecular Science and Technology, Ajou University, Suwon 16499, Republic of Korea.ORCID 0000-0002-1299-9478

Funding

National Research Foundation (NRF), funded by the Ministry of Science and ICT (MSIT) in Korea 2020M3E5D9080661
6 · The paper itself

Abstract

Parkinson's disease (PD) is a common neurodegenerative disorder characterized by the loss of dopaminergic neurons in the substantia nigra. Recent studies have highlighted the significant role of cerebrospinal fluid (CSF) in reflecting pathophysiological PD brain conditions by analyzing the components of CSF. Based on the published literature, we created a single network with altered metabolites in the CSF of patients with PD. We analyzed biological functions related to the transmembrane of mitochondria, respiration of mitochondria, neurodegeneration, and PD using a bioinformatics tool. As the proteome reflects phenotypes, we collected proteome data based on published papers, and the biological function of the single network showed similarities with that of the metabolomic network. Then, we analyzed the single network of integrated metabolome and proteome. In silico predictions based on the single network with integrated metabolomics and proteomics showed that neurodegeneration and PD were predicted to be activated. In contrast, mitochondrial transmembrane activity and respiration were predicted to be suppressed in the CSF of patients with PD. This review underscores the importance of integrated omics analyses in deciphering PD's complex biochemical networks underlying neurodegeneration.

Indexed as

MetabolomeParkinson DiseaseProteomeBiomarkersComputational BiologyHumansMetabolomicsMitochondriaProteomicsBiomarkersProteomecerebrospinal fluidintegrated omicsmetabolomicsParkinson’s diseaseproteomics

Identifiers

PMID39518959
PMCPMC11547079

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.