Evidence map›Paper›PMID 39516462›Full record

ArticleNPJ genomic medicine2024

Coding and non-coding variants in the ciliopathy gene CFAP410 cause early-onset non-syndromic retinal degeneration.

Riccardo Sangermano, Priya Gupta, Cherrell Price, Jinu Han, Julien Navarro, Christel Condroyer, Emily M Place, Aline Antonio, Shizuo Mukai, Xavier Zanlonghi and 9 more

Abstract read
In one paragraph

Article in NPJ genomic medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Riccardo SangermanoOcular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA.
Priya GuptaOcular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA.
Cherrell PriceOcular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA.
Jinu HanDepartment of Ophthalmology, Gangnam Severance Hospital, Institute of Vision Research, Yonsei University College of Medicine, Seoul, Republic of Korea.
Julien NavarroSorbonne Université, INSERM, CNRS, Institut de la Vision, Paris, France.
Christel CondroyerSorbonne Université, INSERM, CNRS, Institut de la Vision, Paris, France.
Emily M PlaceOcular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA.
Aline AntonioSorbonne Université, INSERM, CNRS, Institut de la Vision, Paris, France.
Shizuo MukaiRetina Service, Department of Ophthalmology, Massachusetts Eye and Ear, Harvard Medical School, Boston, MA, USA.
Xavier ZanlonghiCentre de compétence maladies rares, Service d'Ophtalmologie, CHU Rennes, Rennes, France.
José-Alain SahelSorbonne Université, INSERM, CNRS, Institut de la Vision, Paris, France.
Stephanie DiTroiaCenter for Mendelian Genomics, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-6847-6780
Emily O'HeirCenter for Mendelian Genomics, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA.
Jacque L DuncanDepartment of Ophthalmology, University of California, San Francisco, CA, USA.
Eric A PierceOcular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA.
Christina ZeitzSorbonne Université, INSERM, CNRS, Institut de la Vision, Paris, France.ORCID http://orcid.org/0000-0002-3510-1712
Isabelle AudoSorbonne Université, INSERM, CNRS, Institut de la Vision, Paris, France. isabelle.audo@inserm.fr.ORCID http://orcid.org/0000-0003-0698-5309
Rachel M HuckfeldtOcular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9220-2261
Kinga M BujakowskaOcular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA, USA. kinga_bujakowska@meei.harvard.edu.ORCID http://orcid.org/0000-0001-6809-9818

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
Precision Medicine for Inherited Retinal DegenerationsR01EY012910 · NEI · UNIVERSITY OF PENNSYLVANIA · PI Eric A Pierce · 1999 to 2026
$15.9M
P30 Core Grant for Vision ResearchP30EY014104 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI Eric A Pierce · 2002 to 2026
$15.1M
Genetic Causes and Genetic Modifiers of Inherited Retinal DegenerationsR01EY026904 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI BUJAKOWSKA, KINGA, PIERCE, ERIC A · 2017 to 2021
$3.0M
A powerful web-based discovery platform for rare disease geneticsR01HG009141 · NHGRI · BROAD INSTITUTE, INC. · PI QUINLAN, AARON R, REHM, HEIDI L · 2017 to 2020
$2.9M
Finding Missing Genetic Causality of Inherited Retinal DegenerationsR01EY035717 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI Kinga Bujakowska · 2024 to 2026
$2.1M
Agence Nationale de la Recherche (French National Research Agency) ANR-10-LABX-65Agence Nationale de la Recherche (French National Research Agency) ANR-11-IDEX-0004-0Agence Nationale de la Recherche (French National Research Agency) ANR-18-IAHU-0001Foundation Fighting Blindness (FFB) EGI-GE-1218-0753-UCSDNEI NIH HHS P30 EY014104NEI NIH HHS R01 EY012910NEI NIH HHS R01 EY035717U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) R01EY012910U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI) R01EY026904U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) HG009141U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) UM1HG008900
6 · The paper itself

Abstract

Inherited retinal degenerations are blinding genetic disorders characterized by high genetic and phenotypic heterogeneity. In this retrospective study, we describe sixteen families with early-onset non-syndromic retinal degenerations in which affected probands carried rare bi-allelic variants in CFAP410, a ciliary gene previously associated with recessive Jeune syndrome. We detected twelve variants, eight of which were novel, including c.373+91A>G, which led to aberrant splicing. To our knowledge this is the first likely pathogenic deep-intronic variant identified in this gene. Analysis of all reported and novel CFAP410 variants revealed no clear correlation between the severity of the CFAP410-associated phenotypes and the identified causal variants. This is supported by the fact that the frequently encountered missense variant p.(Arg73Pro), often found in syndromic cases, was also associated with non-syndromic retinal degeneration. This study expands the current knowledge of CFAP410-associated ciliopathy by enriching its mutational landscape and supports its association with non-syndromic retinal degeneration.

Identifiers

PMID39516462
PMCPMC11549414

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.