Evidence map›Paper›PMID 39516457›Full record

ArticleNature communications2024

A platform for mapping reactive cysteines within the immunopeptidome.

Chenlu Zhang, Chen Zhou, Assa Magassa, Xiaokang Jin, Deyu Fang, Xiaoyu Zhang

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Chenlu Zhang *Department of Chemistry, Northwestern University, Evanston, IL, 60208, USA.ORCID 0000-0003-4171-5099
Chen Zhou *Department of Chemistry, Northwestern University, Evanston, IL, 60208, USA.
Assa MagassaDepartment of Chemistry, Northwestern University, Evanston, IL, 60208, USA.
Xiaokang JinDepartment of Chemistry, Northwestern University, Evanston, IL, 60208, USA.
Deyu FangDepartment of Pathology, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID 0000-0002-4211-2751
Xiaoyu ZhangDepartment of Chemistry, Northwestern University, Evanston, IL, 60208, USA. zhang@northwestern.edu.ORCID 0000-0002-0951-9664

Funding

Chemistry of Life Processes Predoctoral Training ProgramT32GM149439 · NIGMS · NORTHWESTERN UNIVERSITY · PI NEIL L KELLEHER · 2023 to 2026
$1.6M
NIGMS NIH HHS T32 GM149439U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) T32GM149439
6 · The paper itself

Abstract

The major histocompatibility complex class I antigen presentation pathways play pivotal roles in orchestrating immune responses. Recent studies have begun to explore the therapeutic potential of cysteines within the immunopeptidome, such as the use of covalent ligands to generate haptenated peptide neoepitopes for immunotherapy. In this work, we report a platform for mapping reactive cysteines on MHC-I-bound peptide antigens. We develop cell-impermeable sulfonated maleimide probes capable of capturing reactive cysteines on these antigens. Using these probes in chemoproteomic experiments, we discover that cysteines on MHC-I-bound antigens exhibit various degrees of reactivity. Moreover, interferon-gamma stimulation enhances the reactivity of cysteines at position 8 of 9-mer MHC-I-bound antigens. Finally, we demonstrate that targeting reactive cysteines on MHC-I-bound antigens with a maleimide-conjugated Fc-binding cyclic peptide contributes to the induction of antibody-dependent cellular phagocytosis.

Indexed as

CysteineMaleimidesAnimalsAntigen PresentationHistocompatibility Antigens Class IHumansInterferon-gammaMicePeptidesPhagocytosisCysteineHistocompatibility Antigens Class IInterferon-gammamaleimideMaleimidesPeptides

Identifiers

PMID39516457
PMCPMC11549463

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.