Evidence map›Paper›PMID 39516046›Full record

ArticleGenome research2024

Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding.

Kai Li, Melissa L Smith, J Chris Blazier, Kelli J Kochan, Jonathan M D Wood, Kerstin Howe, Anne E Kwitek, Melinda R Dwinell, Hao Chen, Julia L Ciosek and 4 more

Abstract read
In one paragraph

Article in Genome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. CompletebioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Kai LiGluck Equine Genomics Center, University of Kentucky, Lexington, Kentucky 40503, USA.
Melissa L SmithDepartment of Biochemistry and Molecular Biology, University of Louisville School of Medicine, Louisville, Kentucky 40202, USA.
J Chris BlazierTexas A&M Institute for Genome Sciences and Society, Texas A&M University, College Station, Texas 77843, USA.
Kelli J KochanTexas A&M Institute for Genome Sciences and Society, Texas A&M University, College Station, Texas 77843, USA.
Jonathan M D WoodTree of Life, Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, United Kingdom.
Kerstin HoweTree of Life, Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, United Kingdom.
Anne E KwitekDepartment of Physiology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA.
Melinda R DwinellDepartment of Physiology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA.
Hao ChenDepartment of Pharmacology, University of Tennessee Health Sciences Center, Memphis, Tennessee 38163, USA.
Julia L CiosekGluck Equine Genomics Center, University of Kentucky, Lexington, Kentucky 40503, USA.
Patrick MastersonNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
Terence D MurphyNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
Theodore S KalbfleischGluck Equine Genomics Center, University of Kentucky, Lexington, Kentucky 40503, USA.ORCID 0000-0002-2370-8189
Peter A DorisCenter for Human Genetics, Brown Foundation Institute of Molecular Medicine, McGovern Medical School, University of Texas Health Science Center, Houston, Texas 77030, USA peter.a.doris@uth.tmc.edu.

Funding

RAT GENOME DATABASER01HL064541 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI ANNE E. KWITEK · 1999 to 2026
$50.0M
Text mining in the CloudU24HG010859 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CAROL J BULT, PAUL Warren STERNBERG · 2019 to 2026
$42.0M
Hybrid Rat Diversity Program - Import of HXB/BXH panelR24OD024617 · OD · MEDICAL COLLEGE OF WISCONSIN · PI DWINELL, MELINDA R · 2018 to 2025
$6.8M
Long-read assembly and annotation of rat genomes that are important models of complex genetic diseaseR01HG011252 · NHGRI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DORIS, PETER A, KALBFLEISCH, THEODORE · 2021 to 2025
$2.0M
NHGRI NIH HHS R01 HG011252NHGRI NIH HHS U24 HG010859NHLBI NIH HHS R01 HL064541NIH HHS R24 OD024617
6 · The paper itself

Abstract

We report the construction and analysis of a new reference genome assembly for

Indexed as

GenomeAnimalsGenomicsMaleRatsSequence Analysis, DNA

Identifiers

PMID39516046
PMCPMC11610589

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.