Evidence map›Paper›PMID 39511422›Full record

ArticleEMBO reports2024

In situ cell-surface conformation of the TCR-CD3 signaling complex.

Aswin Natarajan, Yogambigai Velmurugu, Manuel Becerra Flores, Fatoumatta Dibba, Saikiran Beesam, Sally Kikvadze, Xiaotian Wang, Wenjuan Wang, Tianqi Li, Hye Won Shin and 2 more

Abstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. A pan-cancer atlas of therapeutic T cell targets.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Aswin NatarajanLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Yogambigai VelmuruguLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.ORCID 0000-0001-6418-1048
Manuel Becerra FloresDepartment of Biochemistry and Molecular Pharmacology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Fatoumatta DibbaLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Saikiran BeesamLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.ORCID 0009-0000-6987-6236
Sally KikvadzeLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.ORCID 0009-0002-5751-6959
Xiaotian WangLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.ORCID 0009-0002-3330-3975
Wenjuan WangLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Tianqi LiLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Hye Won ShinLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Timothy CardozoDepartment of Biochemistry and Molecular Pharmacology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Michelle KrogsgaardLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York, NY, 10016, USA. Michelle.Krogsgaard@nyulangone.org.ORCID 0000-0001-5006-7981

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANIRBAN MAITRA · 1985 to 2026
$83.1M
T-cell intrinsic mechanisms of resistance to PD-1 checkpoint blockadeR01CA243486 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KROGSGAARD, MICHELLE, ZHU, CHENG · 2020 to 2024
$3.5M
Mechanisms of initiation of T-cell signaling by the TCR-CD3 complexR01GM124489 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KROGSGAARD, MICHELLE · 2018 to 2021
$2.1M
Optimizing TCR-CD3 signaling for immunotherapy of cancerR01CA284604 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MICHELLE KROGSGAARD, Cheng Zhu · 2024 to 2026
$1.9M
Modulating extracellular TCR-CD3 interactions to identify new melanoma immunotherapy targetsR21CA263378 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NATARAJAN, ASWIN · 2021 to 2022
$432k
Foundation for the National Institutes of Health (FNIH) NCI P30CA016087Foundation for the National Institutes of Health (FNIH) NCI R01 CA243486Foundation for the National Institutes of Health (FNIH) NCI R01 CA284604Foundation for the National Institutes of Health (FNIH) NCI R21 CA263378Foundation for the National Institutes of Health (FNIH) NIGMS R01 GM124489NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA243486NCI NIH HHS R01 CA284604NCI NIH HHS R21 CA263378NIGMS NIH HHS R01 GM124489
6 · The paper itself

Abstract

The extracellular molecular organization of the individual CD3 subunits around the αβ T cell receptor (TCR) is critical for initiating T cell signaling. In this study, we incorporate photo-crosslinkers at specific sites within the TCRα, TCRβ, CD3δ, and CD3γ subunits. Through crosslinking and docking, we identify a CD3ε'-CD3γ-CD3ε-CD3δ arrangement situated around the αβTCR in situ within the cell surface environment. We demonstrate the importance of cholesterol in maintaining the stability of the complex and that the 'in situ' complex structure mirrors the structure from 'detergent-purified' complexes. In addition, mutations aimed at stabilizing extracellular TCR-CD3 interfaces lead to poor signaling, suggesting that subunit fluidity is indispensable for signaling. Finally, employing photo-crosslinking and CD3 tetramer assays, we show that the TCR-CD3 complex undergoes minimal subunit movements or reorientations upon interaction with activating antibodies and pMHC tetramers. This suggests an absence of 'inactive-active' conformational states in the TCR constant regions and the extracellular CD3 subunits, unlike the transmembrane regions of the complex. This study contributes a nuanced understanding of TCR signaling, which may inform the development of therapeutics for immune-related disorders.

Indexed as

CD3 ComplexReceptor-CD3 Complex, Antigen, T-CellSignal TransductionCell MembraneCholesterolCross-Linking ReagentsHumansModels, MolecularProtein BindingProtein ConformationProtein SubunitsReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaT-LymphocytesCD3 ComplexCholesterolCross-Linking ReagentsProtein SubunitsReceptor-CD3 Complex, Antigen, T-CellReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaComputational DockingPhoto-crosslinkingT Cell ReceptorTCR-CD3 ComplexTCR Signaling

Identifiers

PMID39511422
PMCPMC11624261

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.